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JAL-4409 JAL-4160 Don't let getdown turn jalviewX:// URIs into absolute local file...
[jalview.git]
/
src
/
jalview
/
bin
/
Jalview.java
2022-11-04
Ben Soares
JAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...
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2022-11-02
Ben Soares
JAL-1988 JAL-3772 Moving packages to somewhere more...
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2022-11-01
Ben Soares
JAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE
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diff to current
2022-10-27
Ben Soares
Merge branch 'develop' into bug/JAL-1988_JAL-3772_impro...
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diff to current
2022-10-25
Ben Soares
JAL-3416 Making FlatLaF default for macs due to a probl...
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diff to current
2022-10-24
Ben Soares
JAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...
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diff to current
2022-09-23
Ben Soares
JAL-1988 JAL-3772 Quit confirmation dialog boxes with...
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diff to current
2022-08-08
Jim Procter
Merge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a...
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2022-06-13
Jim Procter
Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
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diff to current
2022-06-13
Ben Soares
JAL-3416 remove flat as default for linux
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diff to current
2022-06-13
Ben Soares
JAL-3416 Added some mac specific FlatLAF settings....
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diff to current
2022-04-06
Ben Soares
JAL-3991 JAVA_COMPILE_VERSION put into build_properties...
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diff to current
2022-03-08
Ben Soares
JAL-3103 Removed code and unused widgets for defaultBrowser
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diff to current
2022-03-08
Ben Soares
JAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
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diff to current
2022-03-07
Ben Soares
JAL-3103 Switched to (a wrapper around) BrowserLauncher2
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2022-03-04
Jim Procter
JAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and...
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2022-03-04
Jim Procter
JAL-3746 JAL-3814 NONEWS property
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2022-02-17
Jim Procter
JAL-3959 add key retrieval urls that support CORS neede...
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diff to current
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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diff to current
2022-02-11
Ben Soares
JAL-3949 read ~/.jalview_properties before initialising...
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diff to current
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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diff to current
2022-01-28
Ben Soares
Merge branch 'develop' into JAL-3416_different_look_and...
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diff to current
2022-01-10
Ben Soares
JAL-3937 enable AIA download of intermediate certificat...
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commitdiff
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diff to current
2022-01-10
Ben Soares
JAL-3937 enable AIA download of intermediate certificat...
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diff to current
2021-10-05
Ben Soares
JAL-3416 make flat default laf for linux
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diff to current
2021-10-04
Ben Soares
JAL-3416 updated FlatLaf to 1.6 and added some tabbed...
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diff to current
2021-10-04
Ben Soares
Merge branch 'develop' into JAL-3416_different_look_and...
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2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
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diff to current
2021-09-15
Jim Procter
JAL-3741 http to https (and jar to jvp for exampleFile...
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diff to current
2021-02-05
Jim Procter
JAL-3812 new argument ‘-nohtmltemplates’ and user prefe...
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commitdiff
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diff to current
2021-02-05
Jim Procter
JAL-3814 NONEWS property
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commitdiff
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diff to current
2021-01-08
Ben Soares
JAL-3419 improved look of tabs
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diff to current
2021-01-08
Ben Soares
JAL-3416 Added FlatLightLaf, use with -Dlaf=flat property
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diff to current
2020-12-08
Ben Soares
Merge branch 'merge/develop_and_rebase_squashed_merge_J...
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2020-12-07
Ben Soares
JAL-3594 added BG logo. Changed some named Jalviews...
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diff to current
2020-12-01
Ben Soares
JAL-3660 Fix for specified output format when using...
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diff to current
2020-12-01
Ben Soares
JAL-3530 Added a -nowebservicediscovery command line...
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diff to current
2020-11-27
Ben Soares
JAL-3660 Fix for specified output format when using...
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diff to current
2020-11-13
Jim Procter
JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
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diff to current
2020-11-13
Ben Soares
JAL-3757 JAL-3689 Fixed checks for URLs by adding check...
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2020-11-13
Ben Soares
JAL-3633 Set proxy preferences before web calls in...
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diff to current
2020-11-12
Ben Soares
JAL-3633 ensure check both or https:// for urls
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diff to current
2020-11-05
Ben Soares
JAL-3608 cherry pick of 92cb745e7
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2020-09-24
Jim Procter
JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
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diff to current
2020-09-23
Ben Soares
JAL-3757 JAL-3689 Fixed checks for URLs by adding check...
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diff to current
2020-09-23
Ben Soares
JAL-3633 ensure check both or https:// for urls
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diff to current
2020-09-17
Jim Procter
JAL-3741 http to https (and jar to jvp for exampleFile...
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diff to current
2020-09-17
Jim Procter
JAL-3750 parse protocol before checking if argument...
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2020-09-14
Ben Soares
JAL-3609 HiDPI scale setting done via system prop in...
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2020-08-17
Jim Procter
Merge branch 'patch/JAL-3561_JAL-3660_fileformatexport_...
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2020-08-12
Jim Procter
Merge branch 'task/JAL-3608_property_set_laf_and_tests...
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2020-08-12
Ben Soares
JAL-3608 Changes from code review CR-JAL-236
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2020-08-05
Jim Procter
Merge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL...
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2020-08-04
Ben Soares
JAL-3477 Added -help text for jvmmempc and jvmmemmax...
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2020-08-04
Ben Soares
JAL-3477 Added -help text for jvmmempc and jvmmemmax...
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2020-07-08
Ben Soares
Merge branch 'task/JAL-3609_HiDPI_support_in_java'...
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diff to current
2020-07-07
Ben Soares
JAL-3608 Changes from code review CR-JAL-236
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diff to current
2020-07-07
Ben Soares
JAL-3608 Changes from code review CR-JAL-236
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2020-07-07
Ben Soares
JAL-3608 ex stacktraces now go to Cache.log.debug
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2020-07-07
Ben Soares
JAL-3628 System.out/err -> Cache.log.info/error
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diff to current
2020-07-07
Ben Soares
JAL-3628 System.out/err -> Cache.log.info/error
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diff to current
2020-07-01
Ben Soares
Merge branch 'task/JAL-3608_property_set_laf_and_tests_...
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2020-06-16
Ben Soares
JAL-3608 non-JS cherry-pick
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2020-06-16
Jim Procter
JAL-3660 JAL-3561 output alignment as requested file...
bug/JAL-3561_translatefileformats
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diff to current
2020-06-16
Ben Soares
JAL-3608 formatting save only
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diff to current
2020-05-15
Ben Soares
JAL-3609 HiDPI scale setting done via system prop in...
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diff to current
2020-05-04
Ben Soares
JAL-3608 streamlined LaF methods and allow specificying...
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2020-05-03
Ben Soares
JAL-3608 also look at user pref PREFERRED_LAF
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2020-05-01
Ben Soares
JAL-3608 Added java builtin NimbusLookAndFeel option...
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2020-04-30
Ben Soares
JAL-3608 Enforcing MetalLookAndFeel as default on linux...
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diff to current
2020-04-30
Ben Soares
JAL-3608 Added 'metal' option for laf property
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2020-04-23
soares
JAL-3608 JAL-3416 Added a 'gtk' option. Not currently...
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2020-04-22
soares
JAL-3608 saved in Eclipse with auto formatting
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2020-04-22
Ben Soares
JAL-3608 Added CrossPlatform LaF and made configurable...
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2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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2020-02-27
Ben Soares
JAL-3543 remove debugging output
improvement/JAL-3543_dont_report_null_versions_in_java_console
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2020-02-27
Ben Soares
JAL-3543 Conditional reporting of Install4j and Getdown...
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2019-11-22
Ben Soares
JAL-3449 install4j version, install4j template version...
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2019-11-12
gmungoc
JAL-3274 resource path correction, code tidying (consta...
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2019-11-05
gmungoc
JAL-3210 JAL-3130 skip Taskbar in JalviewJS
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2019-11-05
gmungoc
JAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS
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2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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2019-07-02
Jim Procter
Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu
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2019-06-26
Jim Procter
JAL-3334 fix - always load full SO to resolve the seque...
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diff to current
2019-06-26
Jim Procter
JAL-3111 get rid of nasty tab characters
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2019-06-19
Ben Soares
JAL-3321 Last pieces of the getdown-launcher.jar upgrad...
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diff to current
2019-06-17
Jim Procter
JAL-3311 remove menus and documentation relating to...
tasks/JAL-3311_removeVamsasMenu
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2019-06-14
Jim Procter
JAL-3111 report build type and commit in stdout from...
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2019-05-21
Ben Soares
JAL-3247 Launcher start improvements. RPM and DEB no...
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diff to current
2019-04-25
Ben Soares
JAL-3224 JAL-3225 Some fixes in install4j template...
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diff to current
2019-04-25
Ben Soares
JAL-3224 JAL-3225 Added lines to check for updates...
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2019-04-24
Jim Procter
Merge branch 'task/JAL-3225_Integration_Gradle_building...
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commitdiff
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diff to current
2019-04-15
Ben Soares
JAL-3130 Helper classes to take Class Exceptions when...
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commitdiff
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diff to current
2019-04-05
hansonr
fixes for Jalview command-line URI code
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commitdiff
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diff to current
2019-04-03
hansonr
replacing @j2sNative with @j2sIgnore where appropriate...
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commitdiff
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diff to current
2019-04-03
hansonr
j2sNative clean-up. Fixes problem with second try of...
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commitdiff
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diff to current
2019-04-01
Ben Soares
JAL-3130 JAL-3007 Added gradle build for Java 11 and...
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diff to current
2019-03-27
gmungoc
JAL-3032 small formatting and isJS() tidy
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commitdiff
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diff to current
2019-03-27
hansonr
isJS cleanup
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diff to current
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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