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Merge branch 'develop' into improvement/JAL-4193_cl_arg_prevent_startup_file
[jalview.git] / src / jalview / bin / Jalview.java
2020-09-23 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check... blob | commitdiff | diff to current
2020-09-23 Ben SoaresJAL-3633 ensure check both or https:// for urls blob | commitdiff | diff to current
2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... blob | commitdiff | diff to current
2020-09-17 Jim ProcterJAL-3750 parse protocol before checking if argument... blob | commitdiff | diff to current
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... blob | commitdiff | diff to current
2020-08-17 Jim ProcterMerge branch 'patch/JAL-3561_JAL-3660_fileformatexport_... blob | commitdiff | diff to current
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests... blob | commitdiff | diff to current
2020-08-12 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 blob | commitdiff | diff to current
2020-08-05 Jim ProcterMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL... blob | commitdiff | diff to current
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... blob | commitdiff | diff to current
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... blob | commitdiff | diff to current
2020-07-08 Ben SoaresMerge branch 'task/JAL-3609_HiDPI_support_in_java'... blob | commitdiff | diff to current
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 blob | commitdiff | diff to current
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 blob | commitdiff | diff to current
2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug blob | commitdiff | diff to current
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error blob | commitdiff | diff to current
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error blob | commitdiff | diff to current
2020-07-01 Ben SoaresMerge branch 'task/JAL-3608_property_set_laf_and_tests_... blob | commitdiff | diff to current
2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick blob | commitdiff | diff to current
2020-06-16 Jim ProcterJAL-3660 JAL-3561 output alignment as requested file... bug/JAL-3561_translatefileformats blob | commitdiff | diff to current
2020-06-16 Ben SoaresJAL-3608 formatting save only blob | commitdiff | diff to current
2020-05-15 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... blob | commitdiff | diff to current
2020-05-04 Ben SoaresJAL-3608 streamlined LaF methods and allow specificying... blob | commitdiff | diff to current
2020-05-03 Ben SoaresJAL-3608 also look at user pref PREFERRED_LAF blob | commitdiff | diff to current
2020-05-01 Ben SoaresJAL-3608 Added java builtin NimbusLookAndFeel option... blob | commitdiff | diff to current
2020-04-30 Ben SoaresJAL-3608 Enforcing MetalLookAndFeel as default on linux... blob | commitdiff | diff to current
2020-04-30 Ben SoaresJAL-3608 Added 'metal' option for laf property blob | commitdiff | diff to current
2020-04-23 soaresJAL-3608 JAL-3416 Added a 'gtk' option. Not currently... blob | commitdiff | diff to current
2020-04-22 soaresJAL-3608 saved in Eclipse with auto formatting blob | commitdiff | diff to current
2020-04-22 Ben SoaresJAL-3608 Added CrossPlatform LaF and made configurable... blob | commitdiff | diff to current
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop blob | commitdiff | diff to current
2020-02-27 Ben SoaresJAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console blob | commitdiff | diff to current
2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown... blob | commitdiff | diff to current
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version... blob | commitdiff | diff to current
2019-11-12 gmungocJAL-3274 resource path correction, code tidying (consta... blob | commitdiff | diff to current
2019-11-05 gmungocJAL-3210 JAL-3130 skip Taskbar in JalviewJS blob | commitdiff | diff to current
2019-11-05 gmungocJAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS blob | commitdiff | diff to current
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu blob | commitdiff | diff to current
2019-06-26 Jim ProcterJAL-3334 fix - always load full SO to resolve the seque... blob | commitdiff | diff to current
2019-06-26 Jim ProcterJAL-3111 get rid of nasty tab characters blob | commitdiff | diff to current
2019-06-19 Ben SoaresJAL-3321 Last pieces of the getdown-launcher.jar upgrad... blob | commitdiff | diff to current
2019-06-17 Jim ProcterJAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu blob | commitdiff | diff to current
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from... blob | commitdiff | diff to current
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no... blob | commitdiff | diff to current
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template... blob | commitdiff | diff to current
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates... blob | commitdiff | diff to current
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building... blob | commitdiff | diff to current
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... blob | commitdiff | diff to current
2019-04-05 hansonrfixes for Jalview command-line URI code blob | commitdiff | diff to current
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate... blob | commitdiff | diff to current
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of... blob | commitdiff | diff to current
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and... blob | commitdiff | diff to current
2019-03-27 gmungocJAL-3032 small formatting and isJS() tidy blob | commitdiff | diff to current
2019-03-27 hansonrisJS cleanup blob | commitdiff | diff to current
2019-03-13 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... blob | commitdiff | diff to current
2019-03-06 gmungocJAL-3035 more das bits removed blob | commitdiff | diff to current
2019-03-06 Jim ProcterJAL-3208 re-enable the setprop CLI arg, but only in... blob | commitdiff | diff to current
2019-02-28 gmungocJAL-3032 any url parameter not "j2s..." taken as Jalvie... Jalview-BH/JAL-3026-JAL-3063-JAXB blob | commitdiff | diff to current
2019-02-25 gmungocJAL-3032 Jalview (as JS) parse query params to main... blob | commitdiff | diff to current
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... blob | commitdiff | diff to current
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... blob | commitdiff | diff to current
2019-01-18 hansonrcanvas line/font/pixel fixes; menu accelerators; blob | commitdiff | diff to current
2019-01-11 hansonr(commented out but potentially useful) methods to tap... blob | commitdiff | diff to current
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... blob | commitdiff | diff to current
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... blob | commitdiff | diff to current
2018-09-18 Jim ProcterJAL-3035 more dedasification blob | commitdiff | diff to current
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch blob | commitdiff | diff to current
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings blob | commitdiff | diff to current
2018-07-23 gmungocJAL-3056 suppress menu options, and repoint Help, for... blob | commitdiff | diff to current
2018-07-17 bsoaresJAL-3065 blob | commitdiff | diff to current
2018-07-11 Jim ProcterJAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor blob | commitdiff | diff to current
2018-06-27 hansonrJAL-3032 just the changes pulled already blob | commitdiff | diff to current
2018-06-26 Jim ProcterMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... blob | commitdiff | diff to current
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more ! blob | commitdiff | diff to current
2018-06-23 hansonrJAL-3026 JDesktop/JInternalFrames support + relative... blob | commitdiff | diff to current
2018-06-20 hansonrupdate of javajs package; adds org.apache.harmony,... blob | commitdiff | diff to current
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented... blob | commitdiff | diff to current
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work... blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect... blob | commitdiff | diff to current
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test... blob | commitdiff | diff to current
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... blob | commitdiff | diff to current
2016-11-25 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... blob | commitdiff | diff to current
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... blob | commitdiff | diff to current
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-10-05 gmungocJAL-1191 revert to using SequenceOntologyLite due to... blob | commitdiff | diff to current
2016-10-05 gmungocJAL-1191 configure full SO for desktop, SOLite for... blob | commitdiff | diff to current
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum blob | commitdiff | diff to current
2016-08-08 gmungocJAL-2168 document '-nonews' parameter blob | commitdiff | diff to current
2016-08-05 gmungocJAL-2168 skip news feed if parameter "-nonews" is supplied blob | commitdiff | diff to current
2016-07-11 gmungocfile format enum wip changes blob | commitdiff | diff to current
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding blob | commitdiff | diff to current
2016-05-04 gmungocMerge branch 'groovy/JAL-2074_upgradeto2.4.4' into... blob | commitdiff | diff to current
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