Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / datamodel / AlignmentView.java
2020-09-16 Jim ProcterJAL-3748 store an AlignmentView for the complement...
2019-06-04 Jim ProcterMerge branch 'develop' into developtomchmmer
2018-11-19 Jim ProcterJAL-3156 JAL-3127 code tidy
2018-06-01 Jim ProcterJAL-1950 JAL-2937 allow individual groups to be remater...
2018-06-01 Jim ProcterJAL-1551 formatting
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-18 Jim ProcterJAL-2388 return empty hidden columns for fully visible...
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-04-24 gmungocJAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-08-24 gmungocJAL-1424 removed unused and duplicated message keys
2016-03-25 Jim ProcterJAL-2034 JAL-1421 use ArrayLists, and make ‘selection...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-01 Jim ProcterJAL-1853 make getVisibleSeqs more memory efficient...
2015-09-01 Jim ProcterJAL-1853 refactor clip routine from getSequenceStrings
2015-09-01 Jim Procterpatch for JAL-1853 - use given gap character to reconst...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-09-23 darolmarJAL-1355
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula...
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-25 jprocterJAL-1179 note and patch for exceptions raised when...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-07-06 jprocterensure selseq is trimmed to just sequences included...
2011-01-05 jprocterpropagated groups trimmed to correct region on viscontig
2010-12-17 jprocteradjust start and end of intersecting group relative...
2010-12-10 jprocterremove implicit non-1.1 compatible call
2010-12-09 jprocterjava 1.1 patches
2010-12-09 jprocterjava 1.1 patches
2010-12-09 jprocternew methods and test code for JAL-716
2010-12-02 jprocterrefactored visible contig/gap map array intersection...
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2007-02-07 amwaterhouseFormatting
2006-12-07 amwaterhousedont add char[] ref to a string
2006-12-05 amwaterhouseSequence is char []
2006-10-09 jprocterfixed getCompactAlignment method to return proper cigar...
2006-09-05 jproctergetVisibleContigs() returns start and end positions...
2006-09-05 jprocterjavadoc on contigs
2006-08-22 jproctergetSequenceStrings() bug fixed.
2006-08-21 amwaterhouseheader updated
2006-08-17 jproctermoved visible sub-alignment extraction and update from...
2006-08-11 jproctermultiple web service jobs from visible blocks of an...
2006-08-09 jprocterrefactored hidden regions methods and made an Alignment...
2006-08-04 jprocterrecover original data for tree and pca as alignment...