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[jalview.git] / src / jalview / datamodel / AlignmentView.java

2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff
2017-05-18	Jim Procter	JAL-2388 return empty hidden columns for fully visible...	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into	blob \| commitdiff \| diff to current
2017-04-24	gmungoc	JAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-08-24	gmungoc	JAL-1424 removed unused and duplicated message keys	blob \| commitdiff \| diff to current
2016-03-25	Jim Procter	JAL-2034 JAL-1421 use ArrayLists, and make ‘selection...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-01	Jim Procter	JAL-1853 make getVisibleSeqs more memory efficient...	blob \| commitdiff \| diff to current
2015-09-01	Jim Procter	JAL-1853 refactor clip routine from getSequenceStrings	blob \| commitdiff \| diff to current
2015-09-01	Jim Procter	patch for JAL-1853 - use given gap character to reconst...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-02-12	Jim Procter	JAL-1115 List rather than vector for sequence groups...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1473 refactor score matrices and tree score calcula...	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-25	jprocter	JAL-1179 note and patch for exceptions raised when...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-1114 - refactor methods handling Vectors and Hashta...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-07-06	jprocter	ensure selseq is trimmed to just sequences included...	blob \| commitdiff \| diff to current
2011-01-05	jprocter	propagated groups trimmed to correct region on viscontig	blob \| commitdiff \| diff to current
2010-12-17	jprocter	adjust start and end of intersecting group relative...	blob \| commitdiff \| diff to current
2010-12-10	jprocter	remove implicit non-1.1 compatible call	blob \| commitdiff \| diff to current
2010-12-09	jprocter	java 1.1 patches	blob \| commitdiff \| diff to current
2010-12-09	jprocter	java 1.1 patches	blob \| commitdiff \| diff to current
2010-12-09	jprocter	new methods and test code for JAL-716	blob \| commitdiff \| diff to current
2010-12-02	jprocter	refactored visible contig/gap map array intersection...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2006-12-07	amwaterhouse	dont add char[] ref to a string	blob \| commitdiff \| diff to current
2006-12-05	amwaterhouse	Sequence is char []	blob \| commitdiff \| diff to current
2006-10-09	jprocter	fixed getCompactAlignment method to return proper cigar...	blob \| commitdiff \| diff to current
2006-09-05	jprocter	getVisibleContigs() returns start and end positions...	blob \| commitdiff \| diff to current
2006-09-05	jprocter	javadoc on contigs	blob \| commitdiff \| diff to current
2006-08-22	jprocter	getSequenceStrings() bug fixed.	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-08-17	jprocter	moved visible sub-alignment extraction and update from...	blob \| commitdiff \| diff to current
2006-08-11	jprocter	multiple web service jobs from visible blocks of an...	blob \| commitdiff \| diff to current
2006-08-09	jprocter	refactored hidden regions methods and made an Alignment...	blob \| commitdiff \| diff to current
2006-08-04	jprocter	recover original data for tree and pca as alignment...	blob \| commitdiff \| diff to current

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