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JAL-3541 removed clover report generation debug flag (utf-8 encoding enforcement...
[jalview.git] / src / jalview / datamodel / AlignmentView.java
2018-11-19 Jim ProcterJAL-3156 JAL-3127 code tidy blob | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-05-18 Jim ProcterJAL-2388 return empty hidden columns for fully visible... blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into blob | commitdiff | diff to current
2017-04-24 gmungocJAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs blob | commitdiff | diff to current
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-08-24 gmungocJAL-1424 removed unused and duplicated message keys blob | commitdiff | diff to current
2016-03-25 Jim ProcterJAL-2034 JAL-1421 use ArrayLists, and make ‘selection... blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-09-01 Jim ProcterJAL-1853 make getVisibleSeqs more memory efficient... blob | commitdiff | diff to current
2015-09-01 Jim ProcterJAL-1853 refactor clip routine from getSequenceStrings blob | commitdiff | diff to current
2015-09-01 Jim Procterpatch for JAL-1853 - use given gap character to reconst... blob | commitdiff | diff to current
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... blob | commitdiff | diff to current
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups... blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-09-23 darolmarJAL-1355 blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 source formatting blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 blob | commitdiff | diff to current
2014-05-22 Jim ProcterJAL-1503 update version in GPL header blob | commitdiff | diff to current
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula... blob | commitdiff | diff to current
2014-01-29 Jim ProcterJAL-1432 updated copyright notices blob | commitdiff | diff to current
2012-10-22 jprocterJalview 2.8 Source Header blob | commitdiff | diff to current
2012-10-03 jprocterformatting blob | commitdiff | diff to current
2012-09-25 jprocterJAL-1179 note and patch for exceptions raised when... blob | commitdiff | diff to current
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... blob | commitdiff | diff to current
2011-10-10 jprocterupdate author list in license for (JAL-826) blob | commitdiff | diff to current
2011-09-27 jprocterapply version 2.7 copyright blob | commitdiff | diff to current
2011-07-06 jprocterensure selseq is trimmed to just sequences included... blob | commitdiff | diff to current
2011-01-05 jprocterpropagated groups trimmed to correct region on viscontig blob | commitdiff | diff to current
2010-12-17 jprocteradjust start and end of intersecting group relative... blob | commitdiff | diff to current
2010-12-10 jprocterremove implicit non-1.1 compatible call blob | commitdiff | diff to current
2010-12-09 jprocterjava 1.1 patches blob | commitdiff | diff to current
2010-12-09 jprocterjava 1.1 patches blob | commitdiff | diff to current
2010-12-09 jprocternew methods and test code for JAL-716 blob | commitdiff | diff to current
2010-12-02 jprocterrefactored visible contig/gap map array intersection... blob | commitdiff | diff to current
2010-09-23 jprocterJalview 2.6 source licence blob | commitdiff | diff to current
2010-04-30 jprocterjalview 2.5 release banner blob | commitdiff | diff to current
2009-06-08 jprocterapply gpl development license blob | commitdiff | diff to current
2008-09-04 jproctermerge from 2_4_Release branch blob | commitdiff | diff to current
2007-02-07 amwaterhouseFormatting blob | commitdiff | diff to current
2006-12-07 amwaterhousedont add char[] ref to a string blob | commitdiff | diff to current
2006-12-05 amwaterhouseSequence is char [] blob | commitdiff | diff to current
2006-10-09 jprocterfixed getCompactAlignment method to return proper cigar... blob | commitdiff | diff to current
2006-09-05 jproctergetVisibleContigs() returns start and end positions... blob | commitdiff | diff to current
2006-09-05 jprocterjavadoc on contigs blob | commitdiff | diff to current
2006-08-22 jproctergetSequenceStrings() bug fixed. blob | commitdiff | diff to current
2006-08-21 amwaterhouseheader updated blob | commitdiff | diff to current
2006-08-17 jproctermoved visible sub-alignment extraction and update from... blob | commitdiff | diff to current
2006-08-11 jproctermultiple web service jobs from visible blocks of an... blob | commitdiff | diff to current
2006-08-09 jprocterrefactored hidden regions methods and made an Alignment... blob | commitdiff | diff to current
2006-08-04 jprocterrecover original data for tree and pca as alignment... blob | commitdiff | diff to current