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Merge branch 'releases/Release_2_10_Branch' into develop
[jalview.git]
/
src
/
jalview
/
datamodel
/
xdb
/
embl
/
EmblEntry.java
2016-08-18
gmungoc
JAL-1855 fail gracefully if XML has no <sequence> element
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commitdiff
2016-07-06
gmungoc
JAL-2110 fixes and tests for adding dbrefs to EMBL...
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2016-07-01
gmungoc
JAL-2110 code/comment tidy
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diff to current
2016-06-30
gmungoc
JAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN...
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2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
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diff to current
2016-06-21
gmungoc
JAL-2113 tidy up canonicalisation of Uniprot xrefs...
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2016-06-21
gmungoc
JAL-2113 tidy up canonicalisation of Uniprot xrefs...
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2016-06-16
gmungoc
JAL-2112 optimisation of EMBL CDS parsing
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2016-06-15
Jim Procter
Merge branch 'develop' into features/JAL-2110_crossRefD...
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2016-06-14
gmungoc
JAL-2114 more helpful reporting of parse failures
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2016-06-14
gmungoc
JAL-2110 ensure "UniProtKB/Swiss-Prot" dbrefs canonical...
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2016-06-09
gmungoc
JAL-2110 work in progress
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2016-05-26
gmungoc
JAL-2113 additions to embl_mapping.xml / data models...
features/JAL-2113_emblXml1.2
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2016-05-23
gmungoc
JAL-2114 save 'raw' ENA location as a sequence feature...
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2016-05-20
gmungoc
JAL-2113 embl_mapping.xml and code updated for EMBL...
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2016-04-01
gmungoc
JAL-1705 include stop codon in mapped CDS range so...
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2016-03-28
gmungoc
JAL-1705 Javadoc / debug output tweaks
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2016-03-21
gmungoc
JAL-2029 further fixes to get correct xrefs and xrefs...
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2016-03-21
gmungoc
JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
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2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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2015-07-08
gmungoc
JAL-1759 merge from develop
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2015-07-06
gmungoc
JAL-1421 generics used for leaner safer code
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2015-05-12
gmungoc
JAL-1712 fixes/tests for Castor binding and 'show flank...
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2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2012-10-22
jprocter
Jalview 2.8 Source Header
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2011-10-10
jprocter
update author list in license for (JAL-826)
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2011-09-27
jprocter
apply version 2.7 copyright
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2010-09-23
jprocter
apply jalview code style
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2010-09-23
jprocter
Jalview 2.6 source licence
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2010-04-30
jprocter
jalview 2.5 release banner
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2009-06-24
jprocter
fix to cope with EMBL records containing a CDS fragment...
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2009-06-19
jprocter
parent db references and mappings added to retrieved...
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2009-06-08
jprocter
apply gpl development license
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2008-09-04
jprocter
merge from 2_4_Release branch
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2008-02-22
jprocter
CDS segment index
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2007-10-31
jprocter
fix parsing of embl entries like S75919 which have...
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2007-09-29
jprocter
friendlier sequence names for protein products
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2007-08-24
jprocter
todo comments
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2007-07-31
jprocter
debugging cross references and duplicate sequence db...
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2007-07-13
jprocter
debugged mappings and translated sequence recovery
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2007-05-28
jprocter
prototype DBRef and Feature Type semantics (for annotat...
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2007-05-02
jprocter
feature locations are retrieved by associated accession...
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2007-04-24
jprocter
updated mapping for EMBL_Services_V1.1.xsd and tested...
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2007-04-17
jprocter
ascii type
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2007-04-12
jprocter
basic support for multi-exon CDS features
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2007-03-23
jprocter
generalised feature attribute parsing slightly (no...
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2007-03-19
jprocter
initial support for EMBL file parsing.
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