JAL-1853 make getVisibleSeqs more memory efficient by clipping sequences as the seque...
[jalview.git] / src / jalview / datamodel /
2015-09-01 Jim ProcterJAL-1853 make getVisibleSeqs more memory efficient...
2015-09-01 Jim ProcterJAL-1853 refactor clip routine from getSequenceStrings
2015-09-01 Jim Procterpatch for JAL-1853 - use given gap character to reconst...
2015-08-17 gmungocJAL-1800 separated SearchResults.getCharacters() from...
2015-08-17 gmungocJAL-1800 SearchResults.equals() to allow smarter mouseo...
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-08-04 tcofoegbuJAL-1821 updated the reference sequence column of struc...
2015-07-30 tcofoegbuJAL-1443 modified exception notifications
2015-07-23 Jim ProcterMerge branch 'bug/JAL-1819_isNaN' into develop
2015-07-23 Jim ProcterJAL-1551 JAL-1819 formatting/imports
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs!
2015-07-21 tcofoegbuJAL-1443 bugfix to prevent loading of unidentifiable...
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-06 gmungocJAL-1421 generics used for leaner safer code
2015-07-03 gmungocMerge branch 'develop' into features/JAL-892varnaToProject
2015-07-01 gmungocJAL-1802 handle slide sequences edits in split frame...
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-26 tcofoegbuJAL-1641 fixed broken functionalities after refactor
2015-06-26 gmungocMerge branch 'develop' into features/JAL-892varnaToProject
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-18 gmungocJAL-892 JAL-1779 save/restore Varna viewer to/from...
2015-06-18 gmungocJAL-1781 annotation.sequenceRef now sequence id not... features/JAL-1781annotationXmlIds
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments
2015-06-15 Jim ProcterJAL-1775 patch for regression from Anne Menard’s pseudo...
2015-06-15 Jim ProcterJAL-1775 patch regression bug when displayChar is null...
2015-06-15 Jim Procterfix for JAL-1775 (and reorganise imports)
2015-06-12 tcofoegbuJAL-1641 refactor
2015-06-10 gmungocMerge remote-tracking branch
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries...
2015-06-06 Jim ProcterJAL-653 allow a dummy sequence to take on attributes...
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
2015-06-05 Jim ProcterJAL-653 abstract sequence model to support file backed...
2015-06-05 Jim ProcterJAL-653 refactor sequence interface to separate concret...
2015-06-05 Jim ProcterJAL-845 jim @mungo: should this be in a package local...
2015-06-05 Jim ProcterJAL-1551 formatting
2015-06-05 Jim ProcterJAL-653 allow dummy sequences to be created if a sequen...
2015-06-05 Jim ProcterJAL-653 convenience method to resolve strand attribute...
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB...
2015-05-15 gmungocJAL-1270 main method converted to JUnit test 'as seen'
2015-05-15 gmungocJAL-1270 main method converted 'as seen' to JUnit
2015-05-13 gmungocJAL-1712 fixes/tests for Castor binding of EMBL XML...
2015-05-13 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-05-13 tcofoegbuFixed some broken tests
2015-05-12 gmungocJAL-1712 fixes/tests for Castor binding and 'show flank...
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the...
2015-04-14 gmungocJAL-1693 generate multiple exon sequences for 1-many...
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe...
2015-04-07 gmungocJAL-1691 linked scrollling in split frame (Desktop)
2015-04-07 gmungocJAL-1691 defensive check for null
2015-04-01 gmungocJAL-845 fixed start/end range of a mapped SequenceGroup
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor
2015-02-12 Jim ProcterJAL-1115 typecast
2015-02-12 Jim Procterjavadoc
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups...
2015-01-27 gmungocJAL-1588 new class renamed
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s)
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column...
2015-01-20 Charles Ofoegbubasic house keeping
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation...
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions...
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in...
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-28 gmungocJAL-1610 check reference annotations against alignment...
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_...
2014-11-24 Jim ProcterJAL-1595 annotation score is total number of rna helices
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_...
2014-11-21 Jim ProcterJAL-1489 change initial value to distinguish non-rna...
2014-11-20 Jim ProcterJAL-1569 rna pair code in secondary structure character...
2014-11-20 Jim ProcterJAL-674 JAL-1569 mark RNA helix number in the value...
2014-11-18 gmungocMerge branch 'Release_2_8_2_Branch' of https://source...
2014-11-17 Jim Procterformatting
2014-11-17 Jim ProcterJAL-1587 JAL-407 instrument setDataset to add dataset...
2014-11-17 gmungocJAL-1293 hide/show sequence annotations with hide/revea...
2014-11-12 Jim Procterjavadoc
2014-11-03 Jim ProcterJAL-1578 formatting and imports
2014-11-03 Jim ProcterJAL-1551 formatting
2014-11-03 Jim ProcterJAL-674 JAL-961 JAL-1578 accessors and copy constructor...
2014-11-03 Jim Procterjavadoc
2014-10-31 Jim ProcterJAL-674 JAL-961 properties to stash additional informat...
2014-10-30 Jim ProcterJAL-674 helpful javadoc for remap method
2014-10-29 Jim ProcterJAL-674 JAL-1264 remap method to allow annotation posit...
2014-10-23 gmungocJAL-1264 further refactoring and tests
2014-10-21 Jim ProcterJAL-674 JAL-1551 imports dropped during merge
2014-10-21 Jim ProcterJAL-1551 source formatting
2014-10-21 Jim ProcterMerge branch 'features/JAL-1264_showHideAnnotations...
2014-10-21 Jim ProcterJAL-1551 crlf changes
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