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Merge branch 'features/JAL-653_gffalignments' into features/JAL-653_JAL-1766_htslib_r...
[jalview.git]
/
src
/
jalview
/
datamodel
/
2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
features/JAL-653_gffalignments
tree
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commitdiff
2015-06-15
Jim Procter
JAL-1775 patch for regression from Anne Menard’s pseudo...
tree
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commitdiff
2015-06-15
Jim Procter
JAL-1775 patch regression bug when displayChar is null...
tree
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commitdiff
2015-06-15
Jim Procter
fix for JAL-1775 (and reorganise imports)
tree
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commitdiff
2015-06-12
tcofoegbu
JAL-1641 refactor
tree
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commitdiff
2015-06-10
gmungoc
Merge remote-tracking branch
tree
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commitdiff
2015-06-10
gmungoc
JAL-1764 save Chimera/Jmol state as separate entries...
tree
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commitdiff
2015-06-06
Jim Procter
JAL-653 allow a dummy sequence to take on attributes...
tree
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commitdiff
2015-06-05
tcofoegbu
JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 abstract sequence model to support file backed...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 refactor sequence interface to separate concret...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-845 jim @mungo: should this be in a package local...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 allow dummy sequences to be created if a sequen...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 convenience method to resolve strand attribute...
tree
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commitdiff
2015-05-22
tcofoegbu
JAL-1745, JAL-1717 improvement to ensure cached PDB...
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 main method converted to JUnit test 'as seen'
tree
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commitdiff
2015-05-15
gmungoc
JAL-1270 main method converted 'as seen' to JUnit
tree
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commitdiff
2015-05-13
gmungoc
JAL-1712 fixes/tests for Castor binding of EMBL XML...
tree
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commitdiff
2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-05-13
tcofoegbu
Fixed some broken tests
tree
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commitdiff
2015-05-12
gmungoc
JAL-1712 fixes/tests for Castor binding and 'show flank...
tree
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commitdiff
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
tree
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commitdiff
2015-04-14
gmungoc
JAL-1693 generate multiple exon sequences for 1-many...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1693 make exon alignment for get-xref splitframe...
tree
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commitdiff
2015-04-07
gmungoc
JAL-1691 linked scrollling in split frame (Desktop)
tree
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commitdiff
2015-04-07
gmungoc
JAL-1691 defensive check for null
tree
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commitdiff
2015-04-01
gmungoc
JAL-845 fixed start/end range of a mapped SequenceGroup
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1115 typecast
tree
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commitdiff
2015-02-12
Jim Procter
javadoc
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1115 List rather than vector for sequence groups...
tree
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commitdiff
2015-01-27
gmungoc
JAL-1588 new class renamed
tree
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
tree
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commitdiff
2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
tree
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commitdiff
2015-01-23
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 JAL-962 formatting and code change ripples...
tree
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commitdiff
2015-01-22
Charles Ofoegbu
JAL-1553 added applet support for the select-column...
tree
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commitdiff
2015-01-20
Charles Ofoegbu
basic house keeping
tree
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commitdiff
2015-01-20
Charles Ofoegbu
JAL-1553 enhancement of column selection by annotation...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 wrappers for common checks on ColumnSelection
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 ColumnSelection method to hide insertions...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 new method to get a list of insertions in...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
tree
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commitdiff
2015-01-09
Jim Procter
Merge branch 'JAL-1372_referenceseq' into feature_29...
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-11-28
gmungoc
JAL-1610 check reference annotations against alignment...
tree
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commitdiff
2014-11-25
gmungoc
JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
tree
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commitdiff
2014-11-24
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
tree
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commitdiff
2014-11-24
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
tree
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commitdiff
2014-11-24
Jim Procter
JAL-1595 annotation score is total number of rna helices
tree
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
tree
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1489 change initial value to distinguish non-rna...
tree
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commitdiff
2014-11-20
Jim Procter
JAL-1569 rna pair code in secondary structure character...
tree
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commitdiff
2014-11-20
Jim Procter
JAL-674 JAL-1569 mark RNA helix number in the value...
tree
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commitdiff
2014-11-18
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-17
Jim Procter
formatting
tree
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commitdiff
2014-11-17
Jim Procter
JAL-1587 JAL-407 instrument setDataset to add dataset...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1293 hide/show sequence annotations with hide/revea...
tree
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commitdiff
2014-11-12
Jim Procter
javadoc
tree
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commitdiff
2014-11-03
Jim Procter
JAL-1578 formatting and imports
tree
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commitdiff
2014-11-03
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2014-11-03
Jim Procter
JAL-674 JAL-961 JAL-1578 accessors and copy constructor...
tree
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commitdiff
2014-11-03
Jim Procter
javadoc
tree
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commitdiff
2014-10-31
Jim Procter
JAL-674 JAL-961 properties to stash additional informat...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 helpful javadoc for remap method
tree
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commitdiff
2014-10-29
Jim Procter
JAL-674 JAL-1264 remap method to allow annotation posit...
tree
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commitdiff
2014-10-23
gmungoc
JAL-1264 further refactoring and tests
tree
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commitdiff
2014-10-21
Jim Procter
JAL-674 JAL-1551 imports dropped during merge
tree
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commitdiff
2014-10-21
Jim Procter
JAL-1551 source formatting
tree
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commitdiff
2014-10-21
Jim Procter
Merge branch 'features/JAL-1264_showHideAnnotations...
tree
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commitdiff
2014-10-21
Jim Procter
JAL-1551 crlf changes
tree
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commitdiff
2014-10-16
Jim Procter
Merge branch 'feature/JAL-674_dssp' into features/JAL...
features/JAL-1264_showHideAnnotations
tree
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commitdiff
2014-10-15
Jim Procter
JAL-1551 crlf changes due to checkout with text=auto
tree
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commitdiff
2014-10-15
Jim Procter
JAL-1551 crlf changes due to checkout with text=auto
tree
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commitdiff
2014-10-15
Jim Procter
JAL-348 JAL-674 JAL-1564 TODO and implementation error...
tree
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commitdiff
2014-10-15
Jim Procter
JAL-674 patch logic to test whether old and new sequenc...
tree
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commitdiff
2014-10-15
Jim Procter
JAL-674 JAL-1305 JAL-348 new liftOver method and test...
tree
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commitdiff
2014-10-10
gmungoc
JAL-1264 added getAlignmentAnnotations(calcId, label)
tree
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commitdiff
2014-10-10
gmungoc
JAL-1264 reverted (removed added method)
tree
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commitdiff
2014-10-08
gmungoc
Merge branch 'Release_2_8_2_Branch' into
tree
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commitdiff
2014-10-07
gmungoc
JAL-1264 wip
tree
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commitdiff
2014-10-06
Jim Procter
JAL-654 JAL-1264 sequence associated annotation is...
tree
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commitdiff
2014-10-06
Jim Procter
JAL-1115 TODO remove use of java.util.Vector
tree
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commitdiff
2014-10-06
Jim Procter
JAL-654 javadoc createDatasetSequence and transferAnnot...
tree
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commitdiff
2014-09-27
darolmar
JAL-1355
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-09-23
gmungoc
JAL-1264 first cut of panel for annotation show/hide...
tree
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commitdiff
2014-07-18
j.procter@dundee...
JAL-1520 switch between Protein and non-canonical RNA...
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1520 fix unicode translation errors.
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
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