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JAL-3019 correctly form toRange of 'traversed' MapList
[jalview.git] / src / jalview / ext / ensembl / EnsemblGene.java
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... blob | commitdiff
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF blob | commitdiff
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved... blob | commitdiff | diff to current
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri... blob | commitdiff | diff to current
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren... blob | commitdiff | diff to current
2017-10-27 gmungocJAL-1793 spike branch updated to latest blob | commitdiff | diff to current
2017-10-25 gmungocJAL-2743 fall back to parsing description if chromosome... blob | commitdiff | diff to current
2017-10-24 gmungocJAL-2743 look up species and gene loci for Ensembl... blob | commitdiff | diff to current
2017-10-24 gmungocJAL-2738 update spike branch with latest blob | commitdiff | diff to current
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd... blob | commitdiff | diff to current
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF blob | commitdiff | diff to current
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology blob | commitdiff | diff to current
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry blob | commitdiff | diff to current
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene blob | commitdiff | diff to current
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever... blob | commitdiff | diff to current
2017-09-22 gmungocJAL-2738 correct handling of reverse strand genes blob | commitdiff | diff to current
2017-09-21 gmungocJAL-2738 add chromosome coordinate mappings to transcripts blob | commitdiff | diff to current
2017-08-31 gmungocJAL-2253 safer simpler resolution of identifiers using... blob | commitdiff | diff to current
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-06-05 gmungocMerge branch 'develop' into features/JAL-2446NCList blob | commitdiff | diff to current
2017-06-04 Jim ProcterJAL-2582 comment about IDs being lost if they resembl... blob | commitdiff | diff to current
2017-06-04 Jim ProcterJAL-2582 recognise ENS…P peptide IDs and make two getPa... blob | commitdiff | diff to current
2017-05-16 gmungocJAL-2525 put in missing "transcript" feature type blob | commitdiff | diff to current
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s... blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 apply license blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 source formatting blob | commitdiff | diff to current
2016-09-18 Jim ProcterJAL-1795 JAL-2206 prevent NPE when no data returned... blob | commitdiff | diff to current
2016-08-25 Jim ProcterJAL-2106 JAL-2154 cross-refs from Ensembl should verify... blob | commitdiff | diff to current
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles blob | commitdiff | diff to current
2016-04-29 gmungocJAL-2051 better checking of retrieved / duplicated... blob | commitdiff | diff to current
2016-04-11 gmungocJAL-2051 fetch Ensembl Gene accessions one at a time blob | commitdiff | diff to current
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms) blob | commitdiff | diff to current
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI blob | commitdiff | diff to current
2016-03-15 gmungocJAL-1705 code tidy/comment only blob | commitdiff | diff to current
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot blob | commitdiff | diff to current
2016-03-04 gmungocJAL-1705 parse 'description' from GFF as sequence descr... blob | commitdiff | diff to current
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support... blob | commitdiff | diff to current
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts blob | commitdiff | diff to current
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... blob | commitdiff | diff to current
2016-02-19 gmungocJAL-1705 return Ensembl genes for model species for... blob | commitdiff | diff to current
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl... blob | commitdiff | diff to current
2016-02-04 gmungocJAL-1705 additional tests, validation regexp tweaks... blob | commitdiff | diff to current
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard... blob | commitdiff | diff to current
2016-01-30 gmungocJAL-1705 refactored cross-reference fetching (CCDS... blob | commitdiff | diff to current
2016-01-27 gmungocJAL-1705 use GET for single queries; set gene name... blob | commitdiff | diff to current
2016-01-26 gmungocJAL-1705 derive transcript sequences from gene sequence... blob | commitdiff | diff to current
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring blob | commitdiff | diff to current