Merge branch 'features/mchmmer' into features/mchmmer_merge_JAL-1950
[jalview.git] / src / jalview / ext / ensembl / EnsemblGene.java
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and...
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved...
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri...
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren...
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-25 gmungocJAL-2743 fall back to parsing description if chromosome...
2017-10-24 gmungocJAL-2743 look up species and gene loci for Ensembl...
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd...
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever...
2017-09-22 gmungocJAL-2738 correct handling of reverse strand genes
2017-09-21 gmungocJAL-2738 add chromosome coordinate mappings to transcripts
2017-08-31 gmungocJAL-2253 safer simpler resolution of identifiers using...
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-05 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-04 Jim ProcterJAL-2582 comment about IDs being lost if they resembl...
2017-06-04 Jim ProcterJAL-2582 recognise ENS…P peptide IDs and make two getPa...
2017-05-16 gmungocJAL-2525 put in missing "transcript" feature type
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-18 Jim ProcterJAL-1795 JAL-2206 prevent NPE when no data returned...
2016-08-25 Jim ProcterJAL-2106 JAL-2154 cross-refs from Ensembl should verify...
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles
2016-04-29 gmungocJAL-2051 better checking of retrieved / duplicated...
2016-04-11 gmungocJAL-2051 fetch Ensembl Gene accessions one at a time
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms)
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI
2016-03-15 gmungocJAL-1705 code tidy/comment only
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot
2016-03-04 gmungocJAL-1705 parse 'description' from GFF as sequence descr...
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support...
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin...
2016-02-19 gmungocJAL-1705 return Ensembl genes for model species for...
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl...
2016-02-04 gmungocJAL-1705 additional tests, validation regexp tweaks...
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard...
2016-01-30 gmungocJAL-1705 refactored cross-reference fetching (CCDS...
2016-01-27 gmungocJAL-1705 use GET for single queries; set gene name...
2016-01-26 gmungocJAL-1705 derive transcript sequences from gene sequence...
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring