Merge branch 'develop' into releases/Release_2_11_Branch
[jalview.git] / src / jalview / ext / ensembl /
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
2016-08-17 gmungocJAL-2105 rest versions updated to 4.6, change log link...
2016-07-18 gmungocJAL-2105 check content of Ensembl REST ping response
2016-07-06 gmungocJAL-2110 ensuring mapped dbrefs between protein and cds
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into...
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi...
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles
2016-04-29 gmungocJAL-2051 better checking of retrieved / duplicated...
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g....
2016-04-11 gmungocJAL-1705 code/comment tidy only
2016-04-11 gmungocJAL-2051 fetch Ensembl Gene accessions one at a time
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms)
2016-03-23 gmungocJAL-1705 add DBRefEntry for 'self' to retrieved transcr...
2016-03-16 gmungocJAL-1705 xref ENST to correct (ENSP) accession id
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI
2016-03-15 gmungocJAL-1705 code tidy/comment only
2016-03-15 gmungocJAL-1705 compute reverse complement of variants on...
2016-03-11 gmungocJAL-1705 check Retry-After response header
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot
2016-03-04 gmungocJAL-1705 EnsemblGenomes a top level db source
2016-03-04 gmungocJAL-1705 parse 'description' from GFF as sequence descr...
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support...
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin...
2016-02-19 gmungocJAL-1705 regular expression updates, tests, other refac...
2016-02-19 gmungocJAL-1705 return Ensembl genes for model species for...
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl...
2016-02-04 gmungocJAL-1705 additional tests, validation regexp tweaks...
2016-02-04 gmungocJAL-2003 export features on alignment, not alignment...
2016-02-01 gmungocJAL-1705 further unit tests
2016-02-01 gmungocJAL-1705 set Uniprot xref as 'source dbref' (for SIFTS...
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard...
2016-01-30 gmungocJAL-1705 refactored cross-reference fetching (CCDS...
2016-01-29 gmungocJAL-1705 fetch Uniprot and PDB xrefs for Ensembl protei...
2016-01-28 gmungocJAL-1705 refine feature copying to including 5' and...
2016-01-28 gmungocJAL-1705 tests added, minor bugfix and refactoring
2016-01-27 gmungocJAL-1705 add exon name to features and render on peptid...
2016-01-27 gmungocJAL-1705 use GET for single queries; set gene name...
2016-01-26 gmungocJAL-1705 derive transcript sequences from gene sequence...
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring
2016-01-23 gmungocJAL-1705 compute peptide variants from dna; add "conseq...
2016-01-21 gmungocJAL-1705 reworked Ensembl clients now fetching and...
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods...
2015-11-09 gmungocJAL-1705 type enum can encapsulate the corresponding...
2015-06-28 Jim ProcterJAl-1705 ENSEMBL cDNA type cannot be queried with pepti...
2015-06-28 Jim ProcterJAL-1705 javadoc
2015-06-28 Jim ProcterJAL-1705 concrete classes for different ENSEMBL sequenc...
2015-06-28 Jim ProcterJAL-1705 renamed SeqFetcherTest to EnsemblSeqProxyTest
2015-06-26 Jim ProcterJAL-1705 basic client & tests for rest.ensembl.org...