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JAL-2213 removed PDB from db sources list; also code tidy (typed
[jalview.git]
/
src
/
jalview
/
ext
/
jmol
/
2016-09-27
gmungoc
JAL-2233 less verbose logging for Jmol
tree
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commitdiff
2016-09-16
gmungoc
JAL-2164 removed unused parameters from JmolParser...
tree
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commitdiff
2016-09-14
Jim Procter
JAL-2164 create RESNUM features with padding the same...
tree
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commitdiff
2016-09-07
Jim Procter
Merge branch 'develop' into bug/JAL-1803_JAL-2157
tree
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commitdiff
2016-09-07
Jim Procter
JAL-1803 JAL-1919 set type when structure file is parsed
tree
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commitdiff
2016-08-31
tcofoegbu
JAL-2148 further enhancment to CA HETATM processing
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commitdiff
2016-08-15
tcofoegbu
JAL-1919 Added improvement to ensure consistence of...
tree
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commitdiff
2016-08-01
tcofoegbu
JAL-2164 bugfix to convert insCodes of '\000' to '...
tree
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commitdiff
2016-07-22
tcofoegbu
JAL-2148 Bugfix in structureImportSettings string-to...
tree
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commitdiff
2016-07-21
tcofoegbu
Resolve merge conflict for StructureImportSettings
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commitdiff
2016-07-21
tcofoegbu
JAL-2148 fix to heuristically determine chain terminati...
tree
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commitdiff
2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
tree
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commitdiff
2016-07-20
Jim Procter
JAL-1926 JAL-2106 fix name for flag controlling additio...
tree
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commitdiff
2016-07-19
tcofoegbu
JAL-1919 set default structure file format to mmCIF...
tree
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commitdiff
2016-07-13
tcofoegbu
JAL-2135 minor house-keeping
tree
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commitdiff
2016-07-12
tcofoegbu
JAL-2135 NPE bugfix when parsing a structure file with...
tree
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commitdiff
2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
tree
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commitdiff
2016-07-01
tcofoegbu
JAL-2135 bugfix for error preventing processing of...
tree
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commitdiff
2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
tree
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commitdiff
2016-06-23
gmungoc
JAL-2130 now simply viewer.dispose() to close down...
tree
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commitdiff
2016-06-20
gmungoc
JAL-2130 call viewer.dispose() on closing Jmol
tree
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commitdiff
2016-04-06
tcofoegbu
JAL-2047 JAL-1919 fixed empty tooltip text when a cell...
tree
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commitdiff
2016-03-24
tcofoegbu
JAL-1919 Added ability to generate temprature factor...
tree
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commitdiff
2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
tree
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commitdiff
2016-03-15
tcofoegbu
JAL-1919 refined structure view annotation settings...
tree
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commitdiff
2016-03-11
tcofoegbu
JAL-1818 reimplemented sequence and annotation processi...
tree
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commitdiff
2016-03-03
tcofoegbu
JAL-1919 PDBfile and JmolParser refactor
tree
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commitdiff
2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
tree
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commitdiff
2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
tree
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commitdiff
2015-12-03
gmungoc
JAL-1827 code and comment tidy up
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commitdiff
2015-12-02
gmungoc
JAL-1827 refactored to handle missing residues better
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commitdiff
2015-11-11
tcofoegbu
JAL-1479 JAL-1957 Added code to enable simultaneous...
tree
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commitdiff
2015-11-11
tcofoegbu
JAL-1957 JAL-1479 Further optimisation of SIFTs Client...
features/JAL-1479_SIFTS-mapping
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-09-03
gmungoc
JAL-1859 removed unneeded dependency on package not...
tree
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commitdiff
2015-09-03
gmungoc
JAL-1828 lookup table to convert MSE to MET when parsin...
tree
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commitdiff
2015-08-28
gmungoc
JAL-1836 temporary workaround for negative resNumIns...
tree
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commitdiff
2015-08-26
gmungoc
JAL-1759 corrected syntax for 'atom picked' callback...
tree
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commitdiff
2015-08-19
gmungoc
JAL-1742 suppress 'add chain' option for Jmol, pull...
tree
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commitdiff
2015-08-05
Jim Procter
JAL-1821 patch for completeness - first model number...
tree
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commitdiff
2015-08-03
Jim Procter
JAL-1821 JAL-1759 reinstate rotation speed configuratio...
tree
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commitdiff
2015-08-03
Jim Procter
JAL-1821 JAL-1759 updated Jmol has different model...
tree
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commitdiff
2015-08-03
Jim Procter
JAL-1821 avoid race condition when multiple structures...
tree
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commitdiff
2015-06-30
gmungoc
JAL=1759 fix Jmol state command bug; remove debug output
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commitdiff
2015-06-30
gmungoc
JAL-1759 unused JmolPopup removed, code tidy for generics
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commitdiff
2015-06-30
gmungoc
JAL-1759 JMol now Jmol !
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commitdiff
2015-06-29
gmungoc
JAL-1759 correct conversion of Jmol Chain.chainId ...
tree
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commitdiff
2015-06-26
gmungoc
JAL-1759 updates for Jmol 14.2.14_25.06.11
tree
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commitdiff
2015-06-05
gmungoc
JAL-1622 fix bug computing superposition + associated...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1750 View Mapping scoped to that viewer's mappings...
tree
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commitdiff
2015-06-04
gmungoc
JAL-1757 match only first altloc CA in PDB structure...
tree
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commitdiff
2015-05-22
tcofoegbu
Merge branch 'features/JAL-1745_PDB-redownload' into...
tree
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commitdiff
2015-05-22
tcofoegbu
JAL-1745, JAL-1717 improvement to ensure cached PDB...
tree
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commitdiff
2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
tree
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commitdiff
2015-04-30
tcofoegbu
JAL-1717 updated the PDBEntry model and updated the...
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 avoid writing \0 for chain code
tree
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commitdiff
2014-11-26
Jim Procter
JAL-674 friendly name for PDB file included in secondar...
tree
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commitdiff
2014-11-04
Jim Procter
JAL-1213 normalise sequence extracted from Jmol in...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-1551 format and tidy
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-07-22
j.procter@dundee...
JAL-1333 JAL-1533 todo to get Chimera superposing prope...
tree
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commitdiff
2014-07-18
j.procter@dundee...
JAL-674 futzing with bugs
tree
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commitdiff
2014-07-02
Jim Procter
JAL-1333 JAL-1527 refactors to create core structure...
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-04-21
Jim Procter
Merge branch 'jims_marckhacks' into develop
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1476 - don't send broken commands to Jmol when...
tree
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commitdiff
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
2013-07-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
tree
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commitdiff
2013-07-07
Jim Procter
Merge branch 'structures/JAL-1016' into develop
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commitdiff
2013-07-07
Jim Procter
JAL-1345 - set nSeconds arg for chemapps.stolaf.edu...
tree
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commitdiff
2013-07-07
Jim Procter
JAL-1016 Instruct user to report situations where the...
tree
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commitdiff
2013-07-07
Jim Procter
JAL-583 refactor todo about separating code to construc...
tree
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commitdiff
2013-07-07
Jim Procter
fix for JAL-1016 - wait around until we have a complete...
tree
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commitdiff
2013-07-07
Jim Procter
JAL-1016 - do our assertions immediatly
tree
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commitdiff
2013-05-21
Jim Procter
JAL-674 ensure annotation is properly annotated
tree
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commitdiff
2013-05-21
Jim Procter
JAL-1231 add chain ID
tree
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commitdiff
2013-05-21
Jim Procter
JAL-1231 allow Jmol file handler to read from a stream
tree
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commitdiff
2013-02-13
jprocter
fix merge conflicts for finess on JAL-1140 (introduced...
tree
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commitdiff
2013-02-13
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
tree
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commitdiff
2012-12-04
jprocter
JAL-1140 - IO classes should only raise generic IOExcep...
tree
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commitdiff
2012-12-04
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
tree
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commitdiff
2012-11-08
jprocter
tidy imports
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commitdiff
2012-10-24
jprocter
JAL-1193 patch prevents JalviewJmolBinding from handlin...
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-10-03
jprocter
formatting
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commitdiff
2012-09-05
jprocter
JAL-1162 catch security exception and just use bare...
tree
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commitdiff
2012-03-01
jprocter
Merge branch 'Release_2_7_Branch' into develop
tree
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commitdiff
2012-02-12
Jim Procter
(JAL-1016) noted position where race condition occurs
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commitdiff
2012-02-12
Jim Procter
(JAL-1022) ensure all Jmol model filenames are normalis...
tree
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commitdiff
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