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JAL-629 remove jvmArgs for memory for tests. Increase clover memory
[jalview.git]
/
src
/
jalview
/
ext
/
rbvi
/
chimera
/
JalviewChimeraBinding.java
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2022-03-02
Jim Procter
JAL-3619 fix up error messages and try to bail quietly...
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2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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diff to current
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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diff to current
2021-10-18
Jim Procter
JAL-3905 Fix: wait for response when sending mouseovers...
bug/r2_11_2/JAL-3904_structureviewermenu
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diff to current
2020-06-29
gmungoc
JAL-3674 more finessed asynchronous structure commands
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diff to current
2020-06-26
Jim Procter
JAL-3518 fix highlighting in Jalview for selections...
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diff to current
2020-06-26
Jim Procter
JAL-3672 more efficient when debug not enabled
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diff to current
2020-06-25
gmungoc
JAL-2010 unused prototype method removed
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diff to current
2020-06-25
gmungoc
JAL-3518 pull up [get|list]ResidueAttributes to Structu...
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diff to current
2020-06-23
gmungoc
JAL-3518 separation of ChimeraXManager, pull up of...
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diff to current
2020-06-23
gmungoc
JAL-3518 pull up closeViewer() and external viewer...
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2020-05-26
gmungoc
JAL-1761 pattern for structure viewer construction...
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2020-05-21
gmungoc
JAL-3551 copy Jalview features to Pymol 'p' (with pull...
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2020-05-15
gmungoc
JAL-3551 pull up Close Viewer dialog to base class
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2020-05-11
gmungoc
JAL-2422 restore saved ChimeraX session from project
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2020-04-30
gmungoc
JAL-3551 save structure viewer session refactorings...
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diff to current
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
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2020-03-03
gmungoc
JAL-3158 superseded superposeStructures methods removed
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2020-03-03
gmungoc
JAL-3518 more pull up / test coverage of structure...
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2020-02-28
gmungoc
JAL-3518 basic refactoring / pull up of superposeStruct...
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2020-02-21
gmungoc
JAL-3518 more extraction of ChimeraX commands as overrides
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2020-02-21
gmungoc
JAL-2422 tidy of methods and parameters
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2020-02-21
gmungoc
JAL-2422 general pull-up/removal of common or unused...
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2020-02-20
gmungoc
JAL-2422 pull-up refactoring of structure commands...
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2020-02-04
gmungoc
JAL-2422 pull up refactoring in preparation for Chimera...
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2020-01-31
gmungoc
JAL-2422 temporary hacks removed; use hex colours for...
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2020-01-30
gmungoc
JAL-2422 save/restore ChimeraX session
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2020-01-28
gmungoc
JAL-2422 ChimeraX added to Preferences
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2020-01-14
gmungoc
JAL-2422 proof of concept adaptations for ChimeraX...
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2019-12-13
gmungoc
JAL-2422 'label' command to highlight ChimeraX residue...
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2019-12-13
gmungoc
JAL-2422 write Jalview features to ChimeraX via command...
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2019-12-13
gmungoc
JAL-2422 basic proof of concept of ChimeraX opened...
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
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2017-05-01
tcofoegbu
JAL-2465 bugfix and rerefactor renamed getPdbFile(...
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2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
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2017-04-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
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2017-04-24
gmungoc
JAL-2487 remove redundant refreshGUI to minimise thread...
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2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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2017-03-13
gmungoc
JAL-2438 FeatureColourFinder refactored from FeatureRen...
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2017-03-08
gmungoc
JAL-2430 colour columns hidden in alignment gray on...
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2017-03-07
gmungoc
JAL-2295 status messages for Chimera attributes set...
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2017-03-01
gmungoc
Merge branch 'features/JAL-2295setChimeraAttributes...
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2017-01-09
gmungoc
JAL-2371 remove ColourSchemeI.findColour(c), pure inter...
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2016-12-22
gmungoc
JAL-2360 structure viewers now using ColourMenuHelper...
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2016-12-12
gmungoc
JAL-2632 corrected lookup of residue colour
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2016-12-02
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-30
Jim Procter
Merge branch 'features/JAL-2320_closeChimeraAction...
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2016-11-29
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-23
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-16
gmungoc
JAL-2296 unit test for reading Chimera attributes to...
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2016-11-16
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-16
gmungoc
JAL-2296 don't copy attribute with value False
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2016-11-14
gmungoc
JAL-2296 new code and refactoring for 'copy Chimera...
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2016-11-14
gmungoc
JAL-2295 JAL-2296 skeleton 'attributes to features...
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2016-11-11
gmungoc
JAL-2295 (optionally) return Chimera command reply
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2016-11-10
tcofoegbu
JAL-2317 Fixed Chimera command for hiding/showing disti...
bug/JAL-2317_jmol_chimera-chain-factorisation
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2016-11-10
tcofoegbu
Bugfix to enable accurate chain extraction/association...
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2016-11-10
gmungoc
JAL-2320 thread to close Chimera viewer panel if Chimer...
features/JAL-2320_closeChimeraAction
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2016-11-09
gmungoc
JAL-2295 set attributes commands include feature value...
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2016-11-08
gmungoc
JAL-2295 JAL-1596 method to pass a command script file...
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2016-11-08
gmungoc
JAL-2295 extracted AtomSpecModel for reuse in Chimera...
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2016-11-07
gmungoc
JAL-2295 (unoptimised) write Jalview features as Chimer...
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2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
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2016-10-13
gmungoc
JAL-2044 ensure AAStructureBindingModel.pdbEntry has...
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2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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2016-07-12
gmungoc
FileFormat enum wip changes
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2016-05-31
gmungoc
JAL-2123 use "rlabel" command to highlight with label...
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2016-04-04
Jim Procter
JAL-2010 refactoring todo
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2016-02-12
gmungoc
JAL-2010 simple prototype of 'Highlight Selection'...
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2016-02-09
tcofoegbu
JAL-1957 deleted stale comment
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2016-02-09
tcofoegbu
JAL-1957 enabled multi-chain mapping and highlight...
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2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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2015-08-26
gmungoc
JAL-1596 check for null pointer (thread running after...
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2015-08-19
gmungoc
JAL-1742 suppress 'add chain' option for Jmol, pull...
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diff to current
2015-06-05
gmungoc
JAL-1622 fix bug computing superposition + associated...
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diff to current
2015-06-04
gmungoc
JAL-1750 View Mapping scoped to that viewer's mappings...
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diff to current
2015-06-04
gmungoc
JAL-1743 new Chimera menu option to 'fit to window'
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2015-06-04
gmungoc
JAL-1757 match only first altloc CA in PDB structure...
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2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
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2015-05-07
gmungoc
JAL-1575 bare bones RestHandler added
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diff to current
2015-05-06
gmungoc
JAL-1725 parse atomSpec with submodel; debug output...
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commitdiff
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diff to current
2015-05-05
gmungoc
JAL-1725 first version of Jetty server / chimera select...
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diff to current
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
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diff to current
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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commitdiff
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diff to current
2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
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commitdiff
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diff to current
2015-01-08
gmungoc
JAL-1588 part work save/restore of Chimera session
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commitdiff
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diff to current
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
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diff to current
2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
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2014-12-28
gmungoc
Merge branch 'features/JAL-1596ChimeraREST' into develop
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2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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