Merge branch 'bug/JAL-1923_290b2_group_annots' into develop
[jalview.git] / src / jalview / ext /
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-03 gmungocJAL-1859 removed unneeded dependency on package not...
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin...
2015-08-28 gmungocJAL-1836 temporary workaround for negative resNumIns...
2015-08-26 gmungocJAL-1596 check for null pointer (thread running after...
2015-08-26 gmungocJAL-1759 corrected syntax for 'atom picked' callback...
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull...
2015-08-05 Jim ProcterJAL-1821 patch for completeness - first model number...
2015-08-03 Jim ProcterJAL-1821 JAL-1759 reinstate rotation speed configuratio...
2015-08-03 Jim ProcterJAL-1821 JAL-1759 updated Jmol has different model...
2015-08-03 Jim ProcterJAL-1821 avoid race condition when multiple structures...
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-03 gmungocJAL-892 1 second delay for correct initial rendering...
2015-06-30 gmungocJAL=1759 fix Jmol state command bug; remove debug output
2015-06-30 gmungocJAL-1759 unused JmolPopup removed, code tidy for generics
2015-06-30 gmungocJAL-1759 JMol now Jmol !
2015-06-29 gmungocJAL-1759 correct conversion of Jmol Chain.chainId ...
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11
2015-06-18 gmungocJAL-892 JAL-1779 save/restore Varna viewer to/from...
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated...
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings...
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window'
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure...
2015-05-22 tcofoegbuMerge branch 'features/JAL-1745_PDB-redownload' into...
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB...
2015-05-20 gmungocJAL-1741 nucleotide-aware colour schemes applied to...
2015-05-07 gmungocJAL-1575 bare bones RestHandler added
2015-05-06 gmungocJAL-1725 parse atomSpec with submodel; debug output...
2015-05-06 gmungocJAL-1725 fix for redirect of POST to GET, debug output...
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select...
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s)
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project'
2014-12-28 gmungocMerge branch 'features/JAL-1596ChimeraREST' into develop
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-05 gmungocJAL-1609 refactored colour by sequence command, now...
2014-12-03 gmungocJAL-1609 wip on Chimera colour by sequence
2014-11-28 gmungocJAL-1596 first REST interface coded
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B...
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code
2014-11-27 gmungocJAL-1603 if Chimera selected in Preferences, warn if...
2014-11-27 gmungocMerge branch 'Release_2_8_2_Branch' of https://source...
2014-11-26 Jim ProcterJAL-674 friendly name for PDB file included in secondar...
2014-11-26 gmungocJAL-1528 NullPointer check / more informative PDB fetch...
2014-11-21 gmungocJAL-1528 found and readded Colour by Chain ('rainbow...
2014-11-17 gmungocJAL-1528 Chimera Help doc + fixes to setting colours
2014-11-17 gmungocJAL-1528 Chimera tidy errors, focus after align, close...
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface
2014-11-14 gmungocJAL-1528 Chimera Help doc + fixes to setting colours
2014-11-13 gmungocJAL-1528 Chimera tidy errors, focus after align, close...
2014-11-12 gmungocJAL-1528 bug fixes and adjustments to Chimera interface
2014-11-04 Jim ProcterJAL-1213 normalise sequence extracted from Jmol in...
2014-10-30 Jim ProcterJAL-1551 format and tidy
2014-09-23 darolmarJAL-1355
2014-07-22 j.procter@dundee... JAL-1333 fix imports
2014-07-22 j.procter@dundee... JAL-1333 JAL-1533 todo to get Chimera superposing prope...
2014-07-22 j.procter@dundee... JAL-1333 more superposition debugging and deadlock...
2014-07-18 j.procter@dundee... JAL-1333 more refinements - deadlocks still possible...
2014-07-18 j.procter@dundee... JAL-674 futzing with bugs
2014-07-08 j.procter@dundee... JAL-1333 more efficient color statement
2014-07-04 j.procter@dundee... JAL-1333 more abstraction and refactoring and working...
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop
2014-04-21 Jim ProcterJAL-1476 - don't send broken commands to Jmol when...
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-07-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
2013-07-07 Jim ProcterMerge branch 'structures/JAL-1016' into develop
2013-07-07 Jim ProcterJAL-1345 - set nSeconds arg for chemapps.stolaf.edu...
2013-07-07 Jim ProcterJAL-1016 Instruct user to report situations where the...
2013-07-07 Jim ProcterJAL-583 refactor todo about separating code to construc...
2013-07-07 Jim Procterfix for JAL-1016 - wait around until we have a complete...
2013-07-07 Jim ProcterJAL-1016 - do our assertions immediatly
2013-05-26 Jim ProcterJAL-1269 RNAML returned directly from Annotate3d rather...
2013-05-21 Jim ProcterJAL-674 ensure annotation is properly annotated
2013-05-21 Jim ProcterJAL-1231 add chain ID
2013-05-21 Jim ProcterJAL-1231 allow Jmol file handler to read from a stream
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced...
2013-02-13 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data...
2013-02-11 jprocterupgrade to latest paradise services model using JSon...
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep...
2012-12-04 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data...
2012-11-15 jprocterMerge branch 'develop' into menard
2012-11-08 jproctertidy imports
2012-10-24 jprocterJAL-1193 patch prevents JalviewJmolBinding from handlin...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-05 jprocterJAL-1162 catch security exception and just use bare...
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