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JAL-966 @mungo TODO complete: List rather than bare int array
[jalview.git]
/
src
/
jalview
/
gui
/
AlignFrame.java
2015-02-09
Jim Procter
Merge branch 'features/JAL-845splitPaneMergeDevelop...
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2015-02-09
gmungoc
Merge remote-tracking branch 'origin/develop' into
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diff to current
2015-02-06
gmungoc
JAL-845 further code/tests/refactoring
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diff to current
2015-02-06
Jim Procter
JAL-1640 new menu allowing view settings to be transfer...
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diff to current
2015-02-06
Jim Procter
JAL-1640 more properties moved to style bean and ration...
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diff to current
2015-02-06
Jim Procter
JAL-1640 JAL-966 is for boolean getter on AlignViewportI
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diff to current
2015-02-03
gmungoc
JAL-845 code/refactoring/tests related to linking DNA...
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diff to current
2015-02-02
Jim Procter
JAL-1640 updates to use get/setter on viewportI: effici...
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diff to current
2015-01-30
gmungoc
JAL-845 linked protein/dna 'slave' further PoC function...
features/JAL-845linkedProteinDnaEditing
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2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
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2015-01-23
gmungoc
JAL-1635 show warning if less than 3 columns selected...
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diff to current
2015-01-23
Jim Procter
JAL-1551 JAL-962 formatting and code change ripples...
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diff to current
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
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diff to current
2015-01-22
gmungoc
JAL-1619 refactoring / tests to support 'align linked...
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diff to current
2015-01-21
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
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diff to current
2015-01-19
gmungoc
JAL-1619 refactored cDNA translation; modified codon...
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diff to current
2015-01-18
Jim Procter
JAL-1628 employ new AnnotationFile reader method to...
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commitdiff
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diff to current
2015-01-18
gmungoc
JAL-1619 refactoring wip
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diff to current
2015-01-16
gmungoc
JAL-1619 refactoring in progress for Dna translation
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diff to current
2015-01-14
gmungoc
JAL-1619 modified repaint after 'Align As' action
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2015-01-13
Charles Ofoegbu
Merge branch 'features/JAL-1553_select-columns-by-annot...
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diff to current
2015-01-13
Charles Ofoegbu
Refactored AnnotationColumnChoser and AnnotationColorCh...
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diff to current
2015-01-12
gmungoc
JAL-1619 load/align cDNA for protein (wip)
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2015-01-10
Charles Ofoegbu
JAL-1553 merge commit
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diff to current
2015-01-10
Charles Ofoegbu
JAL-1553 implementation of column selection by annotati...
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2015-01-09
Jim Procter
Merge branch 'JAL-1372_referenceseq' into feature_29...
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diff to current
2015-01-08
gmungoc
JAL-1588 part work save/restore of Chimera session
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diff to current
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
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2015-01-04
gmungoc
JAL-1619 first draft of 'linked protein and cDNA'
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2014-12-28
gmungoc
JAL-845 first working linked edit protein -> cDNA
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2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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2014-12-05
Charles Ofoegbu
Merge branch 'features/JAL-1605_html-svg-export' into...
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2014-12-05
Charles Ofoegbu
JAL-1605 added command line support for html export...
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diff to current
2014-12-05
Charles Ofoegbu
JAL-1605 merge commit
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2014-12-05
Charles Ofoegbu
Change the Html export to utilize svg
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2014-11-28
Jim Procter
Merge branch 'JAL-1517_release282' into develop
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2014-11-28
Jim Procter
JAL-1604 formatting
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2014-11-28
Jim Procter
JAL-1604 revised wording and internationalised dialog
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2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into develop
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2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...
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2014-11-27
Jim Procter
JAL-674 JAL-966 new method to retrieve all views
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2014-11-27
Charles Ofoegbu
Merge branch 'bug/JAL-1604_Entire-alignment-submission...
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2014-11-27
Charles Ofoegbu
JAL-1604 Entire sequence submision for MSA job bugfix
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2014-11-25
Charles Ofoegbu
merge commit
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diff to current
2014-11-25
gmungoc
JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
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2014-11-24
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
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2014-11-24
Jim Procter
JAL-1264 update annotation panel dimensions before...
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2014-11-14
Charles Ofoegbu
Merge branch 'feature/JAL-1541_BioJsMSAViewer-export...
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2014-11-14
Charles Ofoegbu
Merge branch 'features/JAL-1541_BioJsMSAViewer-export...
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diff to current
2014-11-14
Charles Ofoegbu
House keeping
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2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
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2014-11-13
Jim Procter
Merge branch 'features/JAL-1469_svg-output-for-figure...
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diff to current
2014-11-13
Jim Procter
Merge branch 'features/JAL-1469_svg-output-for-figure...
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commitdiff
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diff to current
2014-11-12
Charles Ofoegbu
Added support for SVG Export
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commitdiff
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diff to current
2014-11-12
Jim Procter
Merge branch 'features/typed_annotations_calcId' into...
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diff to current
2014-11-06
Jim Procter
Merge branch 'features/JAL-1541_BioJsMSAViewer-export...
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2014-11-03
gmungoc
Merge branch 'features/JAL-1152annotationSorting' of...
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commitdiff
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diff to current
2014-11-03
gmungoc
JAL-1152 annotation sorting preferences and help docume...
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diff to current
2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotation...
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diff to current
2014-10-31
gmungoc
JAL-1152 menu tweaks plus new option to put Autocalc...
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diff to current
2014-10-30
gmungoc
JAL-1152 with sticky annotation sort order that updates...
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diff to current
2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
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commitdiff
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diff to current
2014-10-30
Jim Procter
JAL-1551 format and tidy
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diff to current
2014-10-30
gmungoc
JAL-1152 prototype of new Annotations menu with sort...
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diff to current
2014-10-30
Charles Ofoegbu
JAL-1541 BioJs MSA Viewer export option implementation
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diff to current
2014-10-27
Jim Procter
Merge branch 'Release_2_8_2_Branch' into merge_r282_dev
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diff to current
2014-10-10
gmungoc
JAL-1481 wrap tooltip in html
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diff to current
2014-10-08
gmungoc
Merge branch 'Release_2_8_2_Branch' into
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commitdiff
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diff to current
2014-10-07
gmungoc
JAL-1264 wip
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commitdiff
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diff to current
2014-10-03
Jim Procter
JAL-1355 removed all top level html tags from message...
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commitdiff
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diff to current
2014-10-03
gmungoc
JAL-1506 delete all warning; JAL-1264 show/hide annotations
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diff to current
2014-09-25
gmungoc
JAL-1264 tidy up use of MouseListener for showHideAnnot...
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diff to current
2014-09-23
darolmar
JAL-1355
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diff to current
2014-09-23
gmungoc
JAL-1264 first cut of panel for annotation show/hide...
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diff to current
2014-09-19
darolmar
JAL-1355
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diff to current
2014-08-08
j.procter@dundee...
JAL-1482 feature renderer and manipulation code refacto...
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diff to current
2014-08-08
j.procter@dundee...
JAL-1483 move show sequence feature and sequence featur...
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diff to current
2014-07-18
j.procter@dundee...
ensure the dataset is instantiated before materialising...
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-05-02
Jim Procter
Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...
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2014-05-01
Jim Procter
JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
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2014-04-21
Jim Procter
JAL-1383 scrubbed envision GUI and documentation
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diff to current
2014-04-21
Jim Procter
JAL-1485 JAL-1473 use compound i18n messages to constru...
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diff to current
2014-04-21
Jim Procter
JAL-1466 flag and jalview_properties setting to control...
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diff to current
2014-04-21
Jim Procter
JAL-1466 new calculation menu option to recover the...
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commitdiff
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diff to current
2014-04-21
Jim Procter
tidy imports
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diff to current
2014-04-21
Jim Procter
JAL-1473 tree calcs performed with ScoreModelI instances
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diff to current
2014-04-21
Jim Procter
JAL-1473 menu entries for different score models availa...
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diff to current
2014-02-21
Jim Procter
JAL-1354 use real var-args method signature to avoid...
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commitdiff
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diff to current
2014-02-17
Jim Procter
JAL-535 interface for GUI state update methods that...
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diff to current
2014-02-03
Jim Procter
Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
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diff to current
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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diff to current
2013-12-25
darolmar
JAL-1355 (basic i18n support)
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commitdiff
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diff to current
2013-10-17
Jim Procter
JAL-1397 make sure ColourschemeI instances are up to...
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diff to current
2013-10-08
Jim Procter
Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
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diff to current
2013-10-08
Jim Procter
JAL-1384 group/ungroup sequences with command/ctrl...
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