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Start of creating the objects Archaeopteryx needs
[jalview.git]
/
src
/
jalview
/
gui
/
AlignFrame.java
2014-10-03
gmungoc
JAL-1506 delete all warning; JAL-1264 show/hide annotations
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2014-09-25
gmungoc
JAL-1264 tidy up use of MouseListener for showHideAnnot...
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2014-09-23
darolmar
JAL-1355
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2014-09-23
gmungoc
JAL-1264 first cut of panel for annotation show/hide...
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2014-09-19
darolmar
JAL-1355
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2014-08-08
j.procter@dundee...
JAL-1482 feature renderer and manipulation code refacto...
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2014-08-08
j.procter@dundee...
JAL-1483 move show sequence feature and sequence featur...
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2014-07-18
j.procter@dundee...
ensure the dataset is instantiated before materialising...
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2014-06-06
Jim Procter
JAL-1517 source formatting
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2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-05-02
Jim Procter
Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...
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2014-05-01
Jim Procter
JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
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2014-04-21
Jim Procter
JAL-1383 scrubbed envision GUI and documentation
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2014-04-21
Jim Procter
JAL-1485 JAL-1473 use compound i18n messages to constru...
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2014-04-21
Jim Procter
JAL-1466 flag and jalview_properties setting to control...
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2014-04-21
Jim Procter
JAL-1466 new calculation menu option to recover the...
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2014-04-21
Jim Procter
tidy imports
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2014-04-21
Jim Procter
JAL-1473 tree calcs performed with ScoreModelI instances
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2014-04-21
Jim Procter
JAL-1473 menu entries for different score models availa...
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2014-02-21
Jim Procter
JAL-1354 use real var-args method signature to avoid...
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2014-02-17
Jim Procter
JAL-535 interface for GUI state update methods that...
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2014-02-03
Jim Procter
Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
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2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2013-12-25
darolmar
JAL-1355 (basic i18n support)
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2013-10-17
Jim Procter
JAL-1397 make sure ColourschemeI instances are up to...
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2013-10-08
Jim Procter
Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
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2013-10-08
Jim Procter
JAL-1384 group/ungroup sequences with command/ctrl...
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2013-10-07
Jim Procter
JAL-1385 refactor logic to AlignmentViewController
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2013-10-05
Jim Procter
JAL-1379 graceful degradation to legacy service when...
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2013-09-18
Jim Procter
JAL-1355 - fix compilation errors: typos and missing...
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2013-08-30
Jim Procter
JAL-1367 clear the current representative sequence
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2013-08-29
darolmar
i18n
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2013-08-14
Jim Procter
JAL-1354 replacement of bare strings in GUI dialogs...
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2013-06-17
Jim Procter
JAL-1312 more helpful error message when translation...
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2012-10-22
jprocter
Jalview 2.8 Source Header
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2012-10-03
jprocter
formatting
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2012-09-25
jprocter
JAL-1031 JAL-1032 if selection is non-null but empty...
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2012-09-25
jprocter
JAL-1173 try to catch OOMs when loading annotation...
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2012-09-24
jprocter
JAL-958 enable logo display when normalise option selected
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2012-08-29
jprocter
JAL-48 patch NPE when encountering an alignment window...
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2012-08-28
jprocter
JAL-1145 patch: sequence associated annotation with...
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2012-08-24
jprocter
JAL-1143 - ensure we revalidate annotation panel height...
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2012-08-07
jprocter
JAL-975 JAL-1137 debug messages for web service client...
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2012-08-01
jprocter
JAL-976 ensure protein disorder services appears in...
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2012-06-15
jprocter
JAL-535 refactoring todo
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2012-06-15
jprocter
Extended IProgressIndicator with method to check if...
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2012-06-13
jprocter
javatidy
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2012-06-12
jprocter
JAL-1115 refactor reordering code operating directly...
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2012-06-12
jprocter
JAL-1115 refactor base collection for Alignment from...
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2012-05-30
jprocter
JAL-969 - refactor colourscheme machinery from GUI...
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2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
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2012-05-24
jprocter
TODO: JAL-1108
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2012-05-24
jprocter
JAL-1078 - removed 'Load Score File' menu item and...
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2012-05-24
jprocter
todo: JAL-1108
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2012-05-23
jprocter
JAL-1067 report any warning messages to user
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2012-05-23
jprocter
JAL-1067, JAL-1105 - refactor parser to fit Jalview...
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2012-05-22
jprocter
Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
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2012-04-24
jprocter
JAL-1075, JAL-1061, JAL-1064 - introduced second tier...
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2012-04-20
jprocter
JAL-1064 - hack to create menu item label for each...
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2012-03-27
jprocter
formatting
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2012-03-27
jprocter
JAL-976 - tweak web services gui so empty menus don...
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2011-11-03
jprocter
(JAL-978) discover JABA1 and JABA2 services and generat...
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2011-10-28
jprocter
(JAL-963) refactor RNA helix helper class to schemes
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2011-10-27
jprocter
(JAL-969) refactored alignmentViewport base class to...
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2011-10-21
jprocter
Refactored alignment viewport to use common base, exten...
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2011-10-11
jprocter
normalised logo rendering (JAL-958)
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2011-10-10
jprocter
update author list in license for (JAL-826)
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2011-10-07
jprocter
merge Jan and Lauren's RNA GUI changes into develop...
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2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
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2011-09-27
jprocter
apply version 2.7 copyright
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2011-09-16
jprocter
JAL-574 added option to enable/disable 'follow selectio...
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2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
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2011-09-16
jprocter
JAL-468 JAL-936 sort alignment by tree and autosort...
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2011-09-15
jprocter
JAL-854 tweaked menu layout so services appear before...
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2011-08-17
jprocter
JAL-853 use service action attribute to index services...
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2011-07-29
janengelhardt
JAL-885; Implementation of StructureFrequency.java...
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2011-07-25
janengelhardt
JAL-842; toy example to insert nucleotides in sequences...
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2011-07-25
janengelhardt
JAL-841; Structure trigger token in jalview.io.Alignmen...
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2011-07-25
janengelhardt
Start merging of Laurens Code
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2011-07-21
jprocter
retrieve all sequences matching a particular name ...
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2011-07-09
jprocter
refactored from PopupMenu (for JAL-860)
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2011-02-18
jprocter
JAL-779 and some redraw refinements
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2011-01-21
jprocter
relaxed ID matching parameter JAL-753 and sortBy JAL-754
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2011-01-12
jprocter
selection should be sent after refresh happens
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2011-01-07
jprocter
bulk associate pdb files dropped on to alignment :...
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2010-12-17
jprocter
first publicly accessible test of JAL-724
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2010-12-14
jprocter
refactored and patched for JAL-721
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2010-09-23
jprocter
apply jalview code style
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2010-09-23
jprocter
Jalview 2.6 source licence
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2010-09-19
jprocter
name change for jaba
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2010-09-19
jprocter
thread off sequence fetcher initialisation to make...
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2010-09-10
jprocter
threaded off ws menu building to avoid initial pause...
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2010-08-18
jprocter
JAL-612 - catch hidden OOM related to filling in cut...
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2010-08-18
jprocter
1.5 annotation fix and thread safe menu update
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2010-06-21
jprocter
ensure service menu is rebuilt after update listeners...
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2010-06-19
jprocter
rejigged change support to make it (more) reliable
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2010-06-11
jprocter
patched for JAL-531 - only display full symbol distribu...
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