source.jalview.org Git - jalview.git/history - src/jalview/gui/AlignFrame.java

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[jalview.git] / src / jalview / gui / AlignFrame.java

2023-11-13	James Procter	JAL-4331 construct and pass on overview title before...	blob \| commitdiff
2023-11-03	James Procter	JAL-4090 JAL-1551 spotlessApply	blob \| commitdiff \| diff to current
2023-11-01	James Procter	Merge branch 'feature/JAL-4315_fc_draganddrop' into...	blob \| commitdiff \| diff to current
2023-10-31	James Procter	JAL-244 knock on - make sure alignPanel is laid out...	blob \| commitdiff \| diff to current
2023-10-30	James Procter	Handle feature settings files loaded via drag and drop... feature/JAL-4315_fc_draganddrop	blob \| commitdiff \| diff to current
2023-10-20	Ben Soares	JAL-4298 Remove a stray return in the processGroovyScri...	blob \| commitdiff \| diff to current
2023-10-19	Ben Soares	JAL-4305 Isolate and unify the Jalview object from...	blob \| commitdiff \| diff to current
2023-10-13	Ben Soares	JAL-3783 Updated groovy jars. Requires javaparser...	blob \| commitdiff \| diff to current
2023-09-11	Ben Soares	JAL-4277 --mkdirs with cautious refusal for paths with ..	blob \| commitdiff \| diff to current
2023-09-07	James Procter	JAL-4090 JAL-4160 JAL-4274 image export dimensions...	blob \| commitdiff \| diff to current
2023-09-01	Ben Soares	Merge branch 'feature/JAL-629_--output_-_means_output_t...	blob \| commitdiff \| diff to current
2023-09-01	Ben Soares	JAL-629 Fix --structureimage and options	blob \| commitdiff \| diff to current
2023-08-24	Ben Soares	Merge branch 'bug/JAL-4214_system_freeze_when_opening_f...	blob \| commitdiff \| diff to current
2023-08-18	Ben Soares	Merge branch 'improvement/JAL-4206_improve_JalviewFileC...	blob \| commitdiff \| diff to current
2023-08-18	Ben Soares	Merge branch 'feature/JAL-244_Automatically_adjust_left...	blob \| commitdiff \| diff to current
2023-08-11	Ben Soares	JAL-629 Much better way of dealing with list of filenam...	blob \| commitdiff \| diff to current
2023-08-10	Ben Soares	JAL-629 Change all stdout and stderr output to use...	blob \| commitdiff \| diff to current
2023-08-09	Ben Soares	JAL-629 Enable output to STDOUT when specifying output...	blob \| commitdiff \| diff to current
2023-08-02	Ben Soares	JAL-244 Fix buglet with automatic change in id column...	blob \| commitdiff \| diff to current
2023-07-27	Ben Soares	Merge branch 'develop' into feature/JAL-244_Automatical...	blob \| commitdiff \| diff to current
2023-07-27	Ben Soares	JAL-244 Allow adjusting Id column width in wrap mode...	blob \| commitdiff \| diff to current
2023-07-20	James Procter	JAL-3855 tree title for PAE matrix tree is PAE Matrix... patch/JAL-3855_fixup_pae	blob \| commitdiff \| diff to current
2023-06-29	Ben Soares	JAL-4214 Linux only: Disable menus when internal modal... bug/JAL-4214_system_freeze_when_opening_file_using_gui_in_linux	blob \| commitdiff \| diff to current
2023-06-13	Ben Soares	JAL-3416 Removed a few more JInternalFrame icons with...	blob \| commitdiff \| diff to current
2023-06-07	James Procter	JAL-4195 add exception handling for all image output...	blob \| commitdiff \| diff to current
2023-05-26	James Procter	Merge branch 'develop' into features/JAL-4134_use_annot...	blob \| commitdiff \| diff to current
2023-05-25	James Procter	JAL-2381 copy and paste sequence also copies contact...	blob \| commitdiff \| diff to current
2023-05-25	Ben Soares	JAL-4186 Turn JvOptionPane Callable<Void> handlers...	blob \| commitdiff \| diff to current
2023-05-23	Ben Soares	JAL-629 Added --structureimage code and formatting...	blob \| commitdiff \| diff to current
2023-05-22	Ben Soares	JAL-629 --structureimage with formatting args.	blob \| commitdiff \| diff to current
2023-05-22	James Procter	JAL-4134 only build tree when showing it in the tree...	blob \| commitdiff \| diff to current
2023-05-19	James Procter	JAL-1551 spotlessApply	blob \| commitdiff \| diff to current
2023-05-11	Ben Soares	JAL-629 Fix --tempfac. Hide non-working --notempfac...	blob \| commitdiff \| diff to current
2023-05-02	Ben Soares	JAL-629 Add --renderer arg/subval for vector output...	blob \| commitdiff \| diff to current
2023-04-22	Ben Soares	JAL-629 Test and fix --annotation --ssannotation args...	blob \| commitdiff \| diff to current
2023-03-20	James Procter	JAL-4134 propagate column selection changes in tree...	blob \| commitdiff \| diff to current
2023-03-17	James Procter	JAL-4134 store/restore Newick tree for PAE annotation row	blob \| commitdiff \| diff to current
2023-02-27	James Procter	JAL-4134 display tree for columns - selecting an intern...	blob \| commitdiff \| diff to current
2023-02-22	Ben Soares	Merge branch 'develop' into features/r2_11_2_alphafold...	blob \| commitdiff \| diff to current
2023-02-16	James Procter	Merge branch 'features/r2_11_2_alphafold/JAL-629' into...	blob \| commitdiff \| diff to current
2023-02-13	James Procter	Merge branch 'develop' into feature/JAL-1713_overviewIn...	blob \| commitdiff \| diff to current
2023-02-03	Ben Soares	JAL-629 Fasta sequence id reading whitespace fix. Flexi...	blob \| commitdiff \| diff to current
2023-02-03	James Procter	Merge branch 'develop' into features/r2_11_2_alphafold...	blob \| commitdiff \| diff to current
2023-01-31	James Procter	JAL-1713 update from Jalview 2.11.3 develop	blob \| commitdiff \| diff to current
2022-11-09	Ben Soares	Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...	blob \| commitdiff \| diff to current
2022-11-09	Ben Soares	JAL-3416 Remove all JFrame/JInternalFrame icons (set...	blob \| commitdiff \| diff to current
2022-11-04	Ben Soares	JAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...	blob \| commitdiff \| diff to current
2022-11-03	Ben Soares	JAL-3416 File Chooser iconified, JvOptionPanes iconifie...	blob \| commitdiff \| diff to current
2022-11-03	Ben Soares	JAL-3416 Start to add JInternalFrame icons (to replace...	blob \| commitdiff \| diff to current
2022-10-24	Ben Soares	JAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...	blob \| commitdiff \| diff to current
2022-09-26	Ben Soares	JAL-1988 JAL-3772 linked undostack to saved changes...	blob \| commitdiff \| diff to current
2022-09-16	Jim Procter	JAL-4062 copy highlighted region docs, new Alignment...	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2022-03-04	Jim Procter	JAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2022-02-07	Jim Procter	Merge branch 'feature/JAL-1713_overviewInProject' into...	blob \| commitdiff \| diff to current
2022-02-07	Jim Procter	JAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit... bug/JAL-3785autoOverviewTitle	blob \| commitdiff \| diff to current
2021-09-21	Ben Soares	JAL-3691 automatic insertion of Locale.ROOT to toUpperC...	blob \| commitdiff \| diff to current
2021-09-21	Jim Procter	Merge branch 'doc/JAL-3746_Release_2_11_2' into develop	blob \| commitdiff \| diff to current
2021-09-16	Ben Soares	JAL-3774 combined changes from bug/JAL-3774_splitFrameF...	blob \| commitdiff \| diff to current
2021-09-15	Jim Procter	JAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...	blob \| commitdiff \| diff to current
2021-02-05	Jim Procter	JAL-3811 document SHOW_JWS2_SERVICES user preference...	blob \| commitdiff \| diff to current
2020-12-12	gmungoc	JAL-1713 JAL-3119 JAL-3785 refactored get/set Overview...	blob \| commitdiff \| diff to current
2020-12-11	gmungoc	JAL-3785 set full title on automatically opened Overvie...	blob \| commitdiff \| diff to current
2020-12-11	gmungoc	JAL-1713 fix typo; overview in project with open overvi...	blob \| commitdiff \| diff to current
2020-12-10	gmungoc	JAL-3784 null the right overview reference when it...	blob \| commitdiff \| diff to current
2020-12-10	gmungoc	JAL-3119 include view name (if any) in Overview title	blob \| commitdiff \| diff to current
2020-12-10	gmungoc	JAL-1713 refactorings to allow save/restore Overview...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3775 Eclipse re-formatting commit	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3633 ensure check both or https:// for urls	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3628 Error when saving alert box has been moved...	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3676 Removed BACKUPFILESPRESETENTRY logging for...	blob \| commitdiff \| diff to current
2020-11-10	Ben Soares	JAL-3628 Fixed oddly worded and non-formatted error...	blob \| commitdiff \| diff to current
2020-11-10	Ben Soares	JAL-3628 Even more Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-11-10	Ben Soares	JAL-3628 More Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-09-23	Ben Soares	JAL-3633 ensure check both or https:// for urls	blob \| commitdiff \| diff to current
2020-09-21	Jim Procter	Merge branch 'merge_review/JAL-3490_2_11_2_develop...	blob \| commitdiff \| diff to current
2020-08-31	Jim Procter	JAL-3732 - sequences can be moved up/down in cursor...	blob \| commitdiff \| diff to current
2020-08-31	Jim Procter	JAL-3732 - sequences can be moved up/down in cursor...	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	JAL-3490 merged with 2.11.2 develop	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	Merge branch 'patch/Release_2_11_1_Branch_patch_JAL...	blob \| commitdiff \| diff to current
2020-08-12	Ben Soares	JAL-3676 Removed BACKUPFILESPRESETENTRY logging for...	blob \| commitdiff \| diff to current
2020-07-08	Ben Soares	Merge branch 'releases/Release_2_11_1_Branch' into...	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3628 Fixed oddly worded and non-formatted error...	blob \| commitdiff \| diff to current
2020-07-06	Ben Soares	JAL-3628 Even more Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-07-04	Jim Procter	JAL-3638 don’t move cursor to next gap after moving...	blob \| commitdiff \| diff to current
2020-07-04	Jim Procter	JAL-3680 check whether a sequence selection exists...	blob \| commitdiff \| diff to current
2020-07-04	Jim Procter	JAL-3638 shift+arrow keys in cursor mode jumps cursor...	blob \| commitdiff \| diff to current
2020-07-04	Ben Soares	JAL-3628 More Cache.log.debug statements	blob \| commitdiff \| diff to current
2020-06-29	Jim Procter	JAL-3493 clear search highlights when escape/deselect all	blob \| commitdiff \| diff to current
2020-06-29	Jim Procter	JAL-3493 clear search highlights when escape/deselect all	blob \| commitdiff \| diff to current
2020-06-29	Jim Procter	Merge branch 'bug/JAL-3490findSpanHiddenGaps' into...	blob \| commitdiff \| diff to current
2020-05-19	gmungoc	Merge branch 'develop' into feature/JAL-3551Pymol	blob \| commitdiff \| diff to current
2020-04-21	gmungoc	JAL-3603 load annotation file from RELATIVE_URL in...	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-03-09	gmungoc	Merge branch 'develop' into feature/JAL-2422ChimeraX	blob \| commitdiff \| diff to current
2020-02-21	Jim Procter	JAL-3186 avoid repainting twice in splitframe	blob \| commitdiff \| diff to current
2020-02-21	Jim Procter	Merge branch 'develop' into features/JAL-3187_uitweaks	blob \| commitdiff \| diff to current
2020-02-20	gmungoc	JAL-3187 repaint complement after loading on features	blob \| commitdiff \| diff to current
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