Merge branch 'patch/JAL-4345_pae_epas1_doubleclick' into develop
[jalview.git] / src / jalview / gui / AlignFrame.java
2023-11-13 James ProcterJAL-4331 construct and pass on overview title before...
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply
2023-11-01 James ProcterMerge branch 'feature/JAL-4315_fc_draganddrop' into...
2023-10-31 James ProcterJAL-244 knock on - make sure alignPanel is laid out...
2023-10-30 James ProcterHandle feature settings files loaded via drag and drop... feature/JAL-4315_fc_draganddrop
2023-10-20 Ben SoaresJAL-4298 Remove a stray return in the processGroovyScri...
2023-10-19 Ben SoaresJAL-4305 Isolate and unify the Jalview object from...
2023-10-13 Ben SoaresJAL-3783 Updated groovy jars. Requires javaparser...
2023-09-11 Ben SoaresJAL-4277 --mkdirs with cautious refusal for paths with ..
2023-09-07 James ProcterJAL-4090 JAL-4160 JAL-4274 image export dimensions...
2023-09-01 Ben SoaresMerge branch 'feature/JAL-629_--output_-_means_output_t...
2023-09-01 Ben SoaresJAL-629 Fix --structureimage and options
2023-08-24 Ben SoaresMerge branch 'bug/JAL-4214_system_freeze_when_opening_f...
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-4206_improve_JalviewFileC...
2023-08-18 Ben SoaresMerge branch 'feature/JAL-244_Automatically_adjust_left...
2023-08-11 Ben SoaresJAL-629 Much better way of dealing with list of filenam...
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use...
2023-08-09 Ben SoaresJAL-629 Enable output to STDOUT when specifying output...
2023-08-02 Ben SoaresJAL-244 Fix buglet with automatic change in id column...
2023-07-27 Ben SoaresMerge branch 'develop' into feature/JAL-244_Automatical...
2023-07-27 Ben SoaresJAL-244 Allow adjusting Id column width in wrap mode...
2023-07-20 James ProcterJAL-3855 tree title for PAE matrix tree is PAE Matrix... patch/JAL-3855_fixup_pae
2023-06-29 Ben SoaresJAL-4214 Linux only: Disable menus when internal modal... bug/JAL-4214_system_freeze_when_opening_file_using_gui_in_linux
2023-06-13 Ben SoaresJAL-3416 Removed a few more JInternalFrame icons with...
2023-06-07 James ProcterJAL-4195 add exception handling for all image output...
2023-05-26 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot...
2023-05-25 James ProcterJAL-2381 copy and paste sequence also copies contact...
2023-05-25 Ben SoaresJAL-4186 Turn JvOptionPane Callable<Void> handlers...
2023-05-23 Ben SoaresJAL-629 Added --structureimage code and formatting...
2023-05-22 Ben SoaresJAL-629 --structureimage with formatting args.
2023-05-22 James ProcterJAL-4134 only build tree when showing it in the tree...
2023-05-19 James ProcterJAL-1551 spotlessApply
2023-05-11 Ben SoaresJAL-629 Fix --tempfac. Hide non-working --notempfac...
2023-05-02 Ben SoaresJAL-629 Add --renderer arg/subval for vector output...
2023-04-22 Ben SoaresJAL-629 Test and fix --annotation --ssannotation args...
2023-03-20 James ProcterJAL-4134 propagate column selection changes in tree...
2023-03-17 James ProcterJAL-4134 store/restore Newick tree for PAE annotation row
2023-02-27 James ProcterJAL-4134 display tree for columns - selecting an intern...
2023-02-22 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold...
2023-02-16 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into...
2023-02-13 James ProcterMerge branch 'develop' into feature/JAL-1713_overviewIn...
2023-02-03 Ben SoaresJAL-629 Fasta sequence id reading whitespace fix. Flexi...
2023-02-03 James ProcterMerge branch 'develop' into features/r2_11_2_alphafold...
2023-01-31 James ProcterJAL-1713 update from Jalview 2.11.3 develop
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
2022-11-09 Ben SoaresJAL-3416 Remove all JFrame/JInternalFrame icons (set...
2022-11-04 Ben SoaresJAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...
2022-11-03 Ben SoaresJAL-3416 File Chooser iconified, JvOptionPanes iconifie...
2022-11-03 Ben SoaresJAL-3416 Start to add JInternalFrame icons (to replace...
2022-10-24 Ben SoaresJAL-1988 JAL-3772 Non-blocking modal dialogs for unsave...
2022-09-26 Ben SoaresJAL-1988 JAL-3772 linked undostack to saved changes...
2022-09-16 Jim ProcterJAL-4062 copy highlighted region docs, new Alignment...
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2022-02-07 Jim ProcterMerge branch 'feature/JAL-1713_overviewInProject' into...
2022-02-07 Jim ProcterJAL-3785 JAL- Merge branch 'bug/JAL-3785autoOverviewTit... bug/JAL-3785autoOverviewTitle
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC...
2021-09-21 Jim ProcterMerge branch 'doc/JAL-3746_Release_2_11_2' into develop
2021-09-16 Ben SoaresJAL-3774 combined changes from bug/JAL-3774_splitFrameF...
2021-09-15 Jim ProcterJAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...
2021-02-05 Jim ProcterJAL-3811 document SHOW_JWS2_SERVICES user preference...
2020-12-12 gmungocJAL-1713 JAL-3119 JAL-3785 refactored get/set Overview...
2020-12-11 gmungocJAL-3785 set full title on automatically opened Overvie...
2020-12-11 gmungocJAL-1713 fix typo; overview in project with open overvi...
2020-12-10 gmungocJAL-3784 null the right overview reference when it...
2020-12-10 gmungocJAL-3119 include view name (if any) in Overview title
2020-12-10 gmungocJAL-1713 refactorings to allow save/restore Overview...
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-11-12 Ben SoaresJAL-3628 Error when saving alert box has been moved...
2020-11-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for...
2020-11-10 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error...
2020-11-10 Ben SoaresJAL-3628 Even more Cache.log.debug statements
2020-11-10 Ben SoaresJAL-3628 More Cache.log.debug statements
2020-09-23 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop...
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor...
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor...
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop
2020-08-17 Jim ProcterMerge branch 'patch/Release_2_11_1_Branch_patch_JAL...
2020-08-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for...
2020-07-08 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into...
2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error...
2020-07-06 Ben SoaresJAL-3628 Even more Cache.log.debug statements
2020-07-04 Jim ProcterJAL-3638 don’t move cursor to next gap after moving...
2020-07-04 Jim ProcterJAL-3680 check whether a sequence selection exists...
2020-07-04 Jim ProcterJAL-3638 shift+arrow keys in cursor mode jumps cursor...
2020-07-04 Ben SoaresJAL-3628 More Cache.log.debug statements
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all
2020-06-29 Jim ProcterMerge branch 'bug/JAL-3490findSpanHiddenGaps' into...
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in...
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX
2020-02-21 Jim ProcterJAL-3186 avoid repainting twice in splitframe
2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks
2020-02-20 gmungocJAL-3187 repaint complement after loading on features
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