JAL-1933 consensus calculation doesn’t depend on occupancy row being materialised
[jalview.git] / src / jalview / gui / AlignFrame.java
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
2015-01-13 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot...
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh...
2015-01-10 Charles OfoegbuJAL-1553 merge commit
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati...
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into...
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export...
2014-12-05 Charles OfoegbuJAL-1605 merge commit
2014-12-05 Charles OfoegbuChange the Html export to utilize svg
2014-11-28 Jim ProcterMerge branch 'JAL-1517_release282' into develop
2014-11-28 Jim ProcterJAL-1604 formatting
2014-11-28 Jim ProcterJAL-1604 revised wording and internationalised dialog
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into develop
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into Release_2_8_2_B...
2014-11-27 Jim ProcterJAL-674 JAL-966 new method to retrieve all views
2014-11-27 Charles OfoegbuMerge branch 'bug/JAL-1604_Entire-alignment-submission...
2014-11-27 Charles OfoegbuJAL-1604 Entire sequence submision for MSA job bugfix
2014-11-25 Charles Ofoegbumerge commit
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop
2014-11-24 Jim ProcterJAL-1264 update annotation panel dimensions before...
2014-11-14 Charles OfoegbuMerge branch 'feature/JAL-1541_BioJsMSAViewer-export...
2014-11-14 Charles OfoegbuMerge branch 'features/JAL-1541_BioJsMSAViewer-export...
2014-11-14 Charles OfoegbuHouse keeping
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
2014-11-12 Charles OfoegbuAdded support for SVG Export
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into...
2014-11-06 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export...
2014-11-03 gmungocMerge branch 'features/JAL-1152annotationSorting' of...
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume...
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation...
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc...
2014-10-30 gmungocJAL-1152 with sticky annotation sort order that updates...
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved...
2014-10-30 Jim ProcterJAL-1551 format and tidy
2014-10-30 gmungocJAL-1152 prototype of new Annotations menu with sort...
2014-10-30 Charles OfoegbuJAL-1541 BioJs MSA Viewer export option implementation
2014-10-27 Jim ProcterMerge branch 'Release_2_8_2_Branch' into merge_r282_dev
2014-10-10 gmungocJAL-1481 wrap tooltip in html
2014-10-08 gmungocMerge branch 'Release_2_8_2_Branch' into
2014-10-07 gmungocJAL-1264 wip
2014-10-03 Jim ProcterJAL-1355 removed all top level html tags from message...
2014-10-03 gmungocJAL-1506 delete all warning; JAL-1264 show/hide annotations
2014-09-25 gmungocJAL-1264 tidy up use of MouseListener for showHideAnnot...
2014-09-23 darolmarJAL-1355
2014-09-23 gmungocJAL-1264 first cut of panel for annotation show/hide...
2014-09-19 darolmarJAL-1355
2014-08-08 j.procter@dundee... JAL-1482 feature renderer and manipulation code refacto...
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-07-18 j.procter@dundee... ensure the dataset is instantiated before materialising...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-02 Jim ProcterMerge branch 'Release_2_8_1_Branch' into JAL-1372_refer...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
2014-04-21 Jim ProcterJAL-1383 scrubbed envision GUI and documentation
2014-04-21 Jim ProcterJAL-1485 JAL-1473 use compound i18n messages to constru...
2014-04-21 Jim ProcterJAL-1466 flag and jalview_properties setting to control...
2014-04-21 Jim ProcterJAL-1466 new calculation menu option to recover the...
2014-04-21 Jim Proctertidy imports
2014-04-21 Jim ProcterJAL-1473 tree calcs performed with ScoreModelI instances
2014-04-21 Jim ProcterJAL-1473 menu entries for different score models availa...
2014-02-21 Jim ProcterJAL-1354 use real var-args method signature to avoid...
2014-02-17 Jim ProcterJAL-535 interface for GUI state update methods that...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-12-25 darolmarJAL-1355 (basic i18n support)
2013-10-17 Jim ProcterJAL-1397 make sure ColourschemeI instances are up to...
2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
2013-10-08 Jim ProcterJAL-1384 group/ungroup sequences with command/ctrl...
2013-10-07 Jim ProcterJAL-1385 refactor logic to AlignmentViewController
2013-10-05 Jim ProcterJAL-1379 graceful degradation to legacy service when...
2013-09-18 Jim ProcterJAL-1355 - fix compilation errors: typos and missing...
2013-08-30 Jim ProcterJAL-1367 clear the current representative sequence
2013-08-29 darolmari18n
2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs...
2013-06-17 Jim ProcterJAL-1312 more helpful error message when translation...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-25 jprocterJAL-1031 JAL-1032 if selection is non-null but empty...
2012-09-25 jprocterJAL-1173 try to catch OOMs when loading annotation...
2012-09-24 jprocterJAL-958 enable logo display when normalise option selected
2012-08-29 jprocterJAL-48 patch NPE when encountering an alignment window...
2012-08-28 jprocterJAL-1145 patch: sequence associated annotation with...
2012-08-24 jprocterJAL-1143 - ensure we revalidate annotation panel height...
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