Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
[jalview.git] / src / jalview / gui / AlignViewport.java
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc...
2014-10-30 gmungocJAL-1152 with sticky annotation sort order that updates...
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-08-08 j.procter@dundee... JAL-1483 model and api for feature display list on...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-24 jprocterformatting
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI
2012-08-07 jprocterDebug message associated with TODO for JAL-1136 - re...
2012-07-08 jprocterJAL-976 - storing service parameters on the view model
2012-06-19 jprocterJAL-975 - bespoke AACons settings object to save curren...
2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2011-10-28 jprocterJAL-969 - refactor initialisation of automatic annotati...
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to...
2011-10-21 jprocterRefactored alignment viewport to use common base, exten...
2011-10-14 jprocter(JAL-958) - normalised sequence logo for applet
2011-10-11 jprocternormalised logo rendering (JAL-958)
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-09-27 jprocterapply version 2.7 copyright
2011-08-11 janengelhardtJAL-885; hasRNAStructure method was introduced to Align...
2011-08-10 janengelhardtJAL-885; Structure conservation row is just added if...
2011-08-08 janengelhardtJAL-891; structure logo is adapted to two char's; Missi...
2011-08-08 janengelhardtJAL-891; sequence logos are available on structure...
2011-07-31 janengelhardtJAL-885; StructureConservation row is displayed at...
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java...
2011-07-09 jprocterrefactored from PopupMenu (for JAL-860)
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-02-18 jprocterJAL-574
2011-02-04 jprocterjavadoc
2011-01-18 jprocterrefactored VamsasListener to allow the source of the...
2010-12-09 jprocterrefactored and added methods for getting richer Alignme...
2010-11-12 jprocterpatch for JAL-699 so conservation/consensus threads...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-08-20 jprocteravoid race condition by setting sequence logo flag...
2010-06-11 jprocterpatched for JAL-531 - only display full symbol distribu...
2010-06-08 jprocterfollowSelections flag now set via user preferences...
2010-04-30 jprocterjalview 2.5 release banner
2010-04-29 jprocternew selection manipulation method
2010-04-14 jprocterprofile visualizations are now logos
2010-04-05 jprocterjavadoc
2010-03-30 jproctergroup autoannotation and consensus display settings
2009-10-14 jprocterquick fix for nullpointer in column selection when...
2009-08-21 jprocterviewport setting for displaying sequence logos
2009-07-24 jprocterrefactored conservation thread, added showgroupannotati...
2009-06-08 jprocterapply gpl development license
2009-03-17 jproctersortbytree view setting and action added - setting...
2009-02-24 jprocterbugfix for occasional nullpointer exceptions when selec...
2009-02-06 jproctershowUnconserved view and group setting
2009-01-09 jprocterhack to completely disable calculation of consensus...
2008-12-19 jprocternew sort by length method, justify edit menu entries...
2008-11-12 jprocterselection sending and receiving, autoscrolling to highl...
2008-09-08 jprocterview settings in view submenu and user preferences...
2008-09-04 jproctermerge from 2_4_Release branch
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-04-21 jprocteradded centre annotation labels menu entry (and commente...
2007-10-31 jprocternullpointer bug fix on consensus thread
2007-10-04 jprocterrefactored invertColumnSelection as an object method
2007-09-25 jprocterprimitive methods for getting current undo/redo state...
2007-06-17 jprocterenable mouseover between DNA coding regions and transla...
2007-05-03 amwaterhouseoptimize repaints
2007-05-02 jproctercopy only the sequence associated alignment annotation...
2007-04-23 jprocterdistinct methods for getting references to selected...
2007-04-18 amwaterhousehastext = false
2007-04-18 amwaterhouseQuality does not have text
2007-03-19 jprocterconvenience method to get visible selected region.
2007-02-27 amwaterhouseUse paintAlignment
2007-02-07 amwaterhouseFormatting
2007-01-29 amwaterhouseID_ITALICS option in preferences
2007-01-24 amwaterhouseConservation etc have autoCalculated flag set true
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2006-12-05 amwaterhouseSequence is char []
2006-11-24 amwaterhouseInvert col sel with hidden cols bug fixed
2006-11-21 amwaterhouseRightAlign ids from prefs
2006-11-15 amwaterhouseright align ids
2006-11-13 amwaterhousesequence colours and text colours added
2006-11-07 amwaterhouseTidy up group size after alignmentChanged
2006-11-02 amwaterhouseHistory is per viewport
2006-10-30 amwaterhouseconservation lock
2006-10-27 amwaterhouseRemove consensus annotation if out of memory
2006-10-27 amwaterhouseupdatingConsensus, updatingConservation is static ...
2006-10-27 amwaterhouseReset colour schemes and alignmentChanged moved to...
2006-10-26 amwaterhouseshowConservation, quality, identity not used
2006-10-25 amwaterhouseReturn if negative width, ie alignment deleted
2006-10-18 amwaterhouseset conserve and quality null if outofmemory
2006-10-12 amwaterhouseshowQuality may be updated during archive file load
2006-10-10 amwaterhouseCalculate alWidth earlier
2006-10-10 amwaterhouseMust repaint whole alignPanel
2006-10-10 amwaterhouseConsensus and conservation updated in threads
2006-10-09 jprocterset firstColumn property for an alignmentView object.
2006-10-06 amwaterhouseAAFrequency optimized
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