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Merge remote-tracking branch 'origin/develop' into
[jalview.git] / src / jalview / gui / Jalview2XML.java
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5... blob | commitdiff | diff to current
2015-04-01 gmungocJAL-1264 reinstate Show annotations menu item blob | commitdiff | diff to current
2015-03-30 gmungocJAL-1596 refactoring to allow unit tests to start and... blob | commitdiff | diff to current
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... blob | commitdiff | diff to current
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor blob | commitdiff | diff to current
2015-01-27 gmungocJAL-1588 new class renamed blob | commitdiff | diff to current
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... blob | commitdiff | diff to current
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) blob | commitdiff | diff to current
2015-01-23 gmungocJAL-1588 first working (?) restore of Chimera session... blob | commitdiff | diff to current
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples... blob | commitdiff | diff to current
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour... blob | commitdiff | diff to current
2015-01-09 gmungocJAL-1588 check Chimera session file still exists blob | commitdiff | diff to current
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session blob | commitdiff | diff to current
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related blob | commitdiff | diff to current
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project' blob | commitdiff | diff to current
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched blob | commitdiff | diff to current
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched Release_2_8_2_Branch blob | commitdiff | diff to current
2014-12-05 Charles OfoegbuJAL-1605 merge commit blob | commitdiff | diff to current
2014-12-05 Charles OfoegbuChange the Html export to utilize svg blob | commitdiff | diff to current
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into develop blob | commitdiff | diff to current
2014-11-27 Jim ProcterJAL-1177 JAL-905 cannot recover sequences from dataset... blob | commitdiff | diff to current
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code blob | commitdiff | diff to current
2014-11-14 Charles OfoegbuHouse keeping blob | commitdiff | diff to current
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc blob | commitdiff | diff to current
2014-11-03 Jim ProcterJAL-1578 JAL-674 store/restore alignment annotation... blob | commitdiff | diff to current
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved... blob | commitdiff | diff to current
2014-10-30 Jim ProcterJAL-1551 format and tidy blob | commitdiff | diff to current
2014-09-23 darolmarJAL-1355 blob | commitdiff | diff to current
2014-08-08 j.procter@dundee... JAL-1482 feature renderer and manipulation code refacto... blob | commitdiff | diff to current
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur... blob | commitdiff | diff to current
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure... blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 source formatting blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 blob | commitdiff | diff to current
2014-05-22 Jim ProcterJAL-1503 update version in GPL header blob | commitdiff | diff to current
2014-05-12 Jim ProcterJAL-1397 catch other random version strings blob | commitdiff | diff to current
2014-05-12 Jim Procterpatch for regression introduced JAL-1397 blob | commitdiff | diff to current
2014-05-02 Jim ProcterJAL-1397 JAL-1066 JAL-1233 refactored annotation colour... blob | commitdiff | diff to current
2014-05-02 Jim ProcterJAL-1369 JAL-1397 version check to support correct... blob | commitdiff | diff to current
2014-05-02 Jim Procterformatting blob | commitdiff | diff to current
2014-04-25 Jim ProcterJAL-1177 additional saveState calls to write a dataset... blob | commitdiff | diff to current
2014-04-25 Jim ProcterJAL-1177 patches to loader to cope with dataset only... blob | commitdiff | diff to current
2014-04-25 Jim ProcterJAL-1177 new flag to write a dataset only jalview XML... blob | commitdiff | diff to current
2014-04-21 Jim Procterpatch v2 for JAL-1474 add the newly recovered dataset... blob | commitdiff | diff to current
2014-04-21 Jim Procterpatch v1 for JAL-1474 - make sure we actually set the... blob | commitdiff | diff to current
2014-04-21 Jim ProcterJAL-1474 note about buggy 'merge sequence' operation... blob | commitdiff | diff to current
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge blob | commitdiff | diff to current
2014-01-29 Jim ProcterJAL-1432 updated copyright notices blob | commitdiff | diff to current
2013-10-17 Jim ProcterJAL-1397 make sure annotation colourscheme is up to... blob | commitdiff | diff to current
2013-10-17 Jim ProcterJAL-1397 store colour by sequence and originalColour... blob | commitdiff | diff to current
2013-09-25 Jim ProcterJAL-1270 nominal jalview version string for projects... blob | commitdiff | diff to current
2012-11-08 jprocterJAL-1193 ensure the 'loadedComplete' method gets called... blob | commitdiff | diff to current
2012-11-08 jproctertidy imports blob | commitdiff | diff to current
2012-10-24 jprocterJAL-1193 call setLoadingFromArchiveFinished(true) for... blob | commitdiff | diff to current
2012-10-22 jprocterJalview 2.8 Source Header blob | commitdiff | diff to current
2012-10-03 jprocterformatting blob | commitdiff | diff to current
2012-09-06 jprocterJAL-958 flag indicating if visualization settings for... blob | commitdiff | diff to current
2012-09-06 jprocterJAL-958 store/recover normalised flag blob | commitdiff | diff to current
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI blob | commitdiff | diff to current
2012-08-29 jprocterJAL-1153 new runtime property set to first non-null... blob | commitdiff | diff to current
2012-08-28 jprocterformatting blob | commitdiff | diff to current
2012-08-28 jprocterJAL-1136 sometimes there are no parameters associated... blob | commitdiff | diff to current
2012-08-28 jprocterJAL-1148 reinstate sequence references for annotation... blob | commitdiff | diff to current
2012-08-03 jprocterJAL-1136 Ensure asynchronously calculated autoannotatio... blob | commitdiff | diff to current
2012-08-03 jprocterJAL-1136 JAL-811 JAL-812 store/recover autocalc alignme... blob | commitdiff | diff to current
2012-08-03 jprocterJAL-1136 fix logic for recovering AACons params blob | commitdiff | diff to current
2012-08-03 jprocterJAL-1136 store ws-parameter list as XML element content... blob | commitdiff | diff to current
2012-07-08 jproctera209409239 (JAL-976 - add support for storing service... blob | commitdiff | diff to current
2012-07-01 jprocterJAL-1117 alleviate lock starvation blob | commitdiff | diff to current
2012-06-13 jprocterJAL-1115 refactor base collection for Alignment from... blob | commitdiff | diff to current
2012-06-13 jprocterjavatidy blob | commitdiff | diff to current
2012-05-30 jprocterupdated schema to store and recover belowAlignment... blob | commitdiff | diff to current
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... blob | commitdiff | diff to current
2012-03-01 jprocterMerge branch 'Release_2_7_Branch' into develop blob | commitdiff | diff to current
2012-02-12 Jim Procter(JAL-1022) reverted to original strategy of escaping... blob | commitdiff | diff to current
2012-02-12 Jim Procter(JAL-1050) ensure all filenames passed in to the load... blob | commitdiff | diff to current
2012-02-12 Jim Procter(JAL-1025 JAL-1022) File based equivalence used to... blob | commitdiff | diff to current
2012-02-12 Jim Procter(JAL-1049) only store state reference for sequence... blob | commitdiff | diff to current
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to... blob | commitdiff | diff to current
2011-10-10 jprocterupdate author list in license for (JAL-826) blob | commitdiff | diff to current
2011-09-27 jprocterapply version 2.7 copyright blob | commitdiff | diff to current
2011-09-16 jprocterJAL-747 - made warning message friendlier and more... blob | commitdiff | diff to current
2011-09-14 jprocterpatch for NPE (not clear if NPE is evidence of deeper... blob | commitdiff | diff to current
2011-08-15 jprocterJAL-747 - warning dialog if Jalview can't resolve filen... blob | commitdiff | diff to current
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager... blob | commitdiff | diff to current
2011-04-25 jprocterJAL-824 - patch to schema to allow jmol colouring state... blob | commitdiff | diff to current
2011-04-22 jproctercomments re JAL-823 legacy issue blob | commitdiff | diff to current
2011-04-21 jproctersave and recover graph height, visibility and row posit... blob | commitdiff | diff to current
2011-02-18 jprocterbugfixing for JAL-778 blob | commitdiff | diff to current
2010-09-23 jprocterapply jalview code style blob | commitdiff | diff to current
2010-09-23 jprocterJalview 2.6 source licence blob | commitdiff | diff to current
2010-09-22 jproctertrap out of memory errors specifically associated with... blob | commitdiff | diff to current
2010-09-08 jprocterJAL-634 blob | commitdiff | diff to current
2010-08-27 jprocterrevised sequence/structure binding so one structure... blob | commitdiff | diff to current
2010-08-20 jprocteravoid race condition by setting sequence logo flag... blob | commitdiff | diff to current
2010-08-18 jprocterthread safe construction of Jmol instance and hack... blob | commitdiff | diff to current
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