| 2018-02-20 |
gmungoc | Merge branch 'develop' into features/mchmmer |
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| 2018-02-02 |
gmungoc | JAL-984 merged to spikes-mungo |
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| 2018-01-31 |
gmungoc | JAL-2792 added tooltip to menu items in case of truncation |
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| 2017-11-07 |
gmungoc | JAL-2069 update spike branch with latest |
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| 2017-11-06 |
gmungoc | JAL-2820 include attribute value used for feature colou... |
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| 2017-10-27 |
gmungoc | JAL-1793 spike branch updated to latest |
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| 2017-10-26 |
gmungoc | JAL-2792 html table for Feature Details report |
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| 2017-10-24 |
gmungoc | JAL-2738 update spike branch with latest |
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| 2017-10-24 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF; lambd... |
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| 2017-10-12 |
Jim Procter | JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview |
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| 2017-10-05 |
gmungoc | JAL-2738 update spikes/mungo |
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| 2017-10-05 |
gmungoc | JAL-2744 add score to feature details report, descripti... |
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| 2017-10-04 |
gmungoc | JAL-2744 handle null features list |
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| 2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
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| 2017-09-28 |
gmungoc | JAL-2744 simple Feature Details report from Popup menu |
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| 2017-09-28 |
gmungoc | JAL-2744 refactor PopupMenu constructor to enable addin... |
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| 2017-09-05 |
Jim Procter | Merge branch 'master' into portforward/JAL-2675_2102b1t... |
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| 2017-09-03 |
Jim Procter | Merge branch 'feature/JAL-2587' into documentation... |
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| 2017-08-25 |
TZVanaalten | JAL-2629 remove sequence and group HMMER options |
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| 2017-08-25 |
kiramt | JAL-2587 Removed annoying double repaint on hide insertions |
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| 2017-08-23 |
tzvanaalten | JAL-2629 selected HMM is now a sequence, not a HMM |
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| 2017-08-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList |
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| 2017-08-18 |
TZVanaalten | Merge branch 'develop' into features/hmmer |
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| 2017-08-16 |
Jim Procter | JAL-2418 source formatting |
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| 2017-08-15 |
TZVanaalten | JAL-2629 selected HMM name now shown in HMMER menu |
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| 2017-08-13 |
TZVanaalten | JAL-2629 hmmalign can now be run from the sequence... |
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| 2017-08-11 |
TZVanaalten | JAL-2629 add ability to select HMMs |
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| 2017-07-25 |
TZVanaalten | JAL-2629 add non-functional HMMER menu |
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| 2017-07-24 |
gmungoc | spike branch updated from latest features/JAL-2446 |
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| 2017-06-27 |
gmungoc | JAL-1858 repaint after Amend Features dialog |
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| 2017-06-27 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
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| 2017-06-09 |
gmungoc | JAL-2594 avoid stack trace creating feature on gapped... |
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| 2017-06-05 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
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| 2017-06-04 |
Jim Procter | JAL-2291 only hide/show columns intersecting with curre... |
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| 2017-06-04 |
Jim Procter | JAL-2291 use HiddenColumns.hideMarkedBits and take... |
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| 2017-06-04 |
Jim Procter | JAL-2291 ‘Hide Insertions’ now operates on selection... |
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| 2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
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| 2017-05-17 |
gmungoc | JAL-2504 use (and update) defaults for new feature... |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges |
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| 2017-05-04 |
gmungoc | JAL-2504 allow feature type to be specified for Create... |
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| 2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
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| 2017-04-05 |
gmungoc | JAL-2361 simplify constructors, select unsaved but... |
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| 2017-02-14 |
gmungoc | Merge branch 'develop' into bug/JAL-2346annotationChoice |
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| 2017-02-08 |
gmungoc | JAL-2405 set context on selection group for tailored... |
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| 2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPane... |
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| 2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refact... |
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| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
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| 2017-01-20 |
gmungoc | JAL-2383 make popup colour menu order and wording consi... |
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| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-19 |
gmungoc | JAL-2383 restore PID colour threshold from project... |
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| 2017-01-17 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
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| 2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-11 |
gmungoc | JAL-2344 FileFormats singleton for formats, FileFormatI... |
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| 2017-01-05 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
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| 2017-01-05 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-05 |
gmungoc | JAL-2373 set state of Above PID, By Conservation in... |
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| 2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
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| 2016-12-22 |
gmungoc | JAL-2360 fix bug that prematurely created a SequenceGroup |
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| 2016-12-22 |
gmungoc | JAL-2360 structure viewers now using ColourMenuHelper... |
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| 2016-12-21 |
gmungoc | JAL-2360 ColourMenuHelper now builds and selects items... |
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| 2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignF... |
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| 2016-12-19 |
gmungoc | JAL-2361 select colour menu item by matching its name... |
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| 2016-12-16 |
gmungoc | JAL-2360 refactoring for JalviewColourScheme enum, |
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| 2016-12-13 |
gmungoc | JAL-2361 adding items to applet colour menus, TCoffee... |
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| 2016-12-12 |
gmungoc | JAL-2361 extract methods to (re-)build colour menu |
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| 2016-12-01 |
gmungoc | JAL-2346 unused method removed |
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| 2016-11-28 |
gmungoc | Merge branch 'develop' into trialMerge |
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| 2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
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| 2016-11-24 |
gmungoc | Distinguish text-only output formats and others (.jar... |
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| 2016-11-24 |
tcofoegbu | JAL-2326 updated references of JOptionPane to JvOptionPane |
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| 2016-11-24 |
gmungoc | FileFormatI further tweaks, clean compile |
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| 2016-11-16 |
Jim Procter | Merge branch 'features/JAL-1723_sequenceReport' into... |
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| 2016-11-03 |
kiramt | JAL-2282 Link menu disabled if there are no valid links |
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| 2016-11-02 |
kiramt | Merge remote-tracking branch 'origin/bug/JAL-2282'... |
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| 2016-11-02 |
gmungoc | JAL-98 JAL-1854 encapsulate 'magic number' threshold... |
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| 2016-11-01 |
kiramt | JAL-2282 Refactor SequenceAnnotationReport to use refac... |
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| 2016-11-01 |
kiramt | JAL-2282 Refactored URL link creation into UrlLink |
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| 2016-10-31 |
gmungoc | Merge branch 'develop' into features/JAL-1723_sequenceR... |
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| 2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
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| 2016-10-22 |
kiramt | Working links menu |
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| 2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
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| 2016-10-05 |
Jim Procter | JAL-2189 source formatting |
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| 2016-09-22 |
gmungoc | JAL-1421 typed ResidueProperties.propHash; JAL-2176... |
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| 2016-08-30 |
gmungoc | Merge branch 'develop' into features/filetypeEnum |
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| 2016-08-24 |
gmungoc | JAL-1424 removed two redundant (overwritten) setText... |
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| 2016-08-10 |
gmungoc | JAL-2124 i18n of "All" menu item |
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| 2016-07-18 |
gmungoc | fileFormat enum wip changes |
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| 2016-06-27 |
gmungoc | JAL-2133 refactored duplicated code to AlignmentViewport |
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| 2016-06-20 |
tcofoegbu | JAL-1823 Deleted two obsolete methods in PopupMenu... |
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| 2016-05-27 |
gmungoc | JAL-1942 small tidy (formatting, explict imports, typed... |
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| 2016-04-14 |
gmungoc | JAL-1421 typed map / lists, explicit imports, method... |
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| 2016-04-12 |
gmungoc | JAL-1723 tooltip dbrefs sorted and limited to two per... |
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| 2016-03-30 |
tcofoegbu | JAL-1668 further clean-up of popup menu and NPE check... |
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| 2016-03-28 |
tcofoegbu | JAL-1668 removed redundant UI elements in PopupMenu... |
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| 2015-10-22 |
tcofoegbu | JAL-1942 JAL-1479 DBRefFetcher refactor |
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| 2015-10-16 |
Jim Procter | JAL-1925 update source version in license Release_2_9_0b2 |
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| 2015-10-15 |
tcofoegbu | JAL-1479 refactored SequenceI interface - changed getDB... |
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| 2015-10-08 |
Jim Procter | JAL-1894 update year/version in copyright |
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| 2015-09-10 |
Jim Procter | JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... |
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