JAL-2668 fix broken factory method for colour scheme
[jalview.git] / src / jalview / gui / PopupMenu.java
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer
2018-02-02 gmungocJAL-984 merged to spikes-mungo
2018-01-31 gmungocJAL-2792 added tooltip to menu items in case of truncation
2017-11-07 gmungocJAL-2069 update spike branch with latest
2017-11-06 gmungocJAL-2820 include attribute value used for feature colou...
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-26 gmungocJAL-2792 html table for Feature Details report
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd...
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
2017-10-05 gmungocJAL-2738 update spikes/mungo
2017-10-05 gmungocJAL-2744 add score to feature details report, descripti...
2017-10-04 gmungocJAL-2744 handle null features list
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-28 gmungocJAL-2744 simple Feature Details report from Popup menu
2017-09-28 gmungocJAL-2744 refactor PopupMenu constructor to enable addin...
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t...
2017-09-03 Jim ProcterMerge branch 'feature/JAL-2587' into documentation...
2017-08-25 TZVanaaltenJAL-2629 remove sequence and group HMMER options
2017-08-25 kiramtJAL-2587 Removed annoying double repaint on hide insertions
2017-08-23 tzvanaaltenJAL-2629 selected HMM is now a sequence, not a HMM
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-18 TZVanaaltenMerge branch 'develop' into features/hmmer
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-15 TZVanaaltenJAL-2629 selected HMM name now shown in HMMER menu
2017-08-13 TZVanaaltenJAL-2629 hmmalign can now be run from the sequence...
2017-08-11 TZVanaaltenJAL-2629 add ability to select HMMs
2017-07-25 TZVanaaltenJAL-2629 add non-functional HMMER menu
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-06-27 gmungocJAL-1858 repaint after Amend Features dialog
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-09 gmungocJAL-2594 avoid stack trace creating feature on gapped...
2017-06-05 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-04 Jim ProcterJAL-2291 only hide/show columns intersecting with curre...
2017-06-04 Jim ProcterJAL-2291 use HiddenColumns.hideMarkedBits and take...
2017-06-04 Jim ProcterJAL-2291 ‘Hide Insertions’ now operates on selection...
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const...
2017-05-17 gmungocJAL-2504 use (and update) defaults for new feature...
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but...
2017-02-14 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice
2017-02-08 gmungocJAL-2405 set context on selection group for tailored...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact...
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-20 gmungocJAL-2383 make popup colour menu order and wording consi...
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project...
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-05 gmungocJAL-2373 set state of Above PID, By Conservation in...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-22 gmungocJAL-2360 fix bug that prematurely created a SequenceGroup
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items...
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-12-19 gmungocJAL-2361 select colour menu item by matching its name...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-13 gmungocJAL-2361 adding items to applet colour menus, TCoffee...
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu
2016-12-01 gmungocJAL-2346 unused method removed
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 gmungocDistinguish text-only output formats and others (.jar...
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-24 gmungocFileFormatI further tweaks, clean compile
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into...
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold...
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac...
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink
2016-10-31 gmungocMerge branch 'develop' into features/JAL-1723_sequenceR...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-22 kiramtWorking links menu
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-24 gmungocJAL-1424 removed two redundant (overwritten) setText...
2016-08-10 gmungocJAL-2124 i18n of "All" menu item
2016-07-18 gmungocfileFormat enum wip changes
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport
2016-06-20 tcofoegbuJAL-1823 Deleted two obsolete methods in PopupMenu...
2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed...
2016-04-14 gmungocJAL-1421 typed map / lists, explicit imports, method...
2016-04-12 gmungocJAL-1723 tooltip dbrefs sorted and limited to two per...
2016-03-30 tcofoegbuJAL-1668 further clean-up of popup menu and NPE check...
2016-03-28 tcofoegbuJAL-1668 removed redundant UI elements in PopupMenu...
2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB...
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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