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[jalview.git] / src / jalview / gui / SequenceFetcher.java

2023-08-10	Ben Soares	JAL-629 Change all stdout and stderr output to use...	blob \| commitdiff
2022-11-09	Ben Soares	JAL-3416 Remove all JFrame/JInternalFrame icons (set...	blob \| commitdiff \| diff to current
2022-11-03	Ben Soares	JAL-3416 Start to add JInternalFrame icons (to replace...	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2021-09-29	Ben Soares	JAL-3885 Made the database JComboBox have StringPair...	blob \| commitdiff \| diff to current
2021-09-02	Jim Procter	Merge branch 'develop' into features/r2_11_2/JAL-3829_3...	blob \| commitdiff \| diff to current
2021-09-02	gmungoc	JAL-3509 JAL-1842 minor tidying of code	blob \| commitdiff \| diff to current
2021-08-30	Jim Procter	JAL-3829 3d-beacons has a custom alignment retrieval...	blob \| commitdiff \| diff to current
2021-04-06	Jim Procter	JAL-3832 dummy 3d-beacons database client and code...	blob \| commitdiff \| diff to current
2020-02-06	gmungoc	JAL-3509 JAL-1842 minor tidying of code	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3144 better error message if no database selected	blob \| commitdiff \| diff to current
2019-01-30	gmungoc	Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of	blob \| commitdiff \| diff to current
2019-01-30	gmungoc	JAL-3144 don't change comma to semi-colon if not requested!	blob \| commitdiff \| diff to current
2019-01-30	hansonr	woops.	blob \| commitdiff \| diff to current
2019-01-30	hansonr	fixes unidentified Java problem	blob \| commitdiff \| diff to current
2019-01-26	hansonr	Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...	blob \| commitdiff \| diff to current
2019-01-21	hansonr	added Platform settings separating mouse use of win...	blob \| commitdiff \| diff to current
2019-01-21	hansonr	isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...	blob \| commitdiff \| diff to current
2018-10-30	gmungoc	JAL-3144 left aligned looks better (and works in Jalvie...	blob \| commitdiff \| diff to current
2018-10-30	gmungoc	JAL-3144 close SequenceFetcher before opening PDB/Unipr...	blob \| commitdiff \| diff to current
2018-10-30	gmungoc	JAL-3144 spelling, Javadoc, abstract method for JalviewJS	blob \| commitdiff \| diff to current
2018-10-29	gmungoc	JAL-3144 SequenceFetcher without JDatabaseTree	blob \| commitdiff \| diff to current
2018-10-04	gmungoc	JAL-3132 set status message when over sequence id or...	blob \| commitdiff \| diff to current
2018-08-27	hansonr	JAL-3026 alignmentFrame.statusBar.setText -> .setStatus	blob \| commitdiff \| diff to current
2018-06-27	hansonr	JAL-3032 just the changes pulled already	blob \| commitdiff \| diff to current
2018-06-26	Jim Procter	Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...	blob \| commitdiff \| diff to current
2018-06-26	Jim Procter	JAL-3035 - jalview-das is no more !	blob \| commitdiff \| diff to current
2018-06-22	gmungoc	JAL-3032 avoid assignments on the same line as synchronized	blob \| commitdiff \| diff to current
2018-04-12	gmungoc	JAL-2944 tidies for review comments	blob \| commitdiff \| diff to current
2017-11-15	gmungoc	JAL-2835 spike updated with latest	blob \| commitdiff \| diff to current
2017-11-07	Jim Procter	JAL-2810 ‘Close’ is now ‘Cancel’ in SequenceFetcher...	blob \| commitdiff \| diff to current
2017-11-07	Jim Procter	JAL-2810 working back button shown for bulk ID retrieva...	blob \| commitdiff \| diff to current
2017-10-27	Jim Procter	JAL-2810 prototype retrieve ID tab for the Uniprot...	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-21	gmungoc	Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-05-12	gmungoc	JAL-2480 efficient test for features present on sequence	blob \| commitdiff \| diff to current
2017-04-10	tcofoegbu	JAL-2473 added improvement to apply default / custom...	blob \| commitdiff \| diff to current
2016-11-28	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-08-30	Jim Procter	Merge branch 'develop' into merge/develop_bug/JAL-2154p... merge/develop_bug/JAL-2154projectMappings	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	JAL-2183 simplified database tree actionPerformed,...	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	JAL-2183 removed redundant (overriden) add panel to...	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	Merge branch 'develop' into features/filetypeEnum	blob \| commitdiff \| diff to current
2016-08-13	Jim Procter	JAL-2154 ignore all but the primary source resolved...	blob \| commitdiff \| diff to current
2016-08-13	Jim Procter	JAL-2154 make sure we wait for constructor thread to...	blob \| commitdiff \| diff to current
2016-08-11	Jim Procter	JAL-2154 jalview.gui.SequenceFetcher.fetchAndShow(db...	blob \| commitdiff \| diff to current
2016-08-11	Jim Procter	JAL-2154 JAL-1993 relocate show dbchooser action out...	blob \| commitdiff \| diff to current
2016-07-12	gmungoc	FileFormat enum wip changes	blob \| commitdiff \| diff to current
2016-06-21	Jim Procter	Merge branch 'features/JAL-2110_crossRefDuplications...	blob \| commitdiff \| diff to current
2016-06-16	gmungoc	JAL-1993 close sequence fetcher when opening database...	blob \| commitdiff \| diff to current
2016-06-16	gmungoc	JAL-1993 hide sequence fetcher dialogue until database...	blob \| commitdiff \| diff to current
2016-06-03	gmungoc	JAL-2110 random stuff	blob \| commitdiff \| diff to current
2016-05-26	gmungoc	JAL-1993 open sequence fetcher tree on 'fetch sequences'	blob \| commitdiff \| diff to current
2016-05-03	gmungoc	JAL-2050 hide introns also when fetching Ensembl xrefs...	blob \| commitdiff \| diff to current
2016-04-29	tcofoegbu	merge	blob \| commitdiff \| diff to current
2016-04-29	gmungoc	JAL-2051 better checking of retrieved / duplicated...	blob \| commitdiff \| diff to current
2016-04-27	tcofoegbu	re-enabled new uniprot sequence fetcher on spike branch	blob \| commitdiff \| diff to current
2016-04-26	tcofoegbu	JAL-1563 reverted to old uniprot fetcher to enable...	blob \| commitdiff \| diff to current
2016-04-22	tcofoegbu	JAL-2071 further refactoring, optimisation, and house...	blob \| commitdiff \| diff to current
2016-04-19	tcofoegbu	JAL-2071 architectural improvement for Plugable Free...	blob \| commitdiff \| diff to current
2016-04-12	gmungoc	JAL-2050 only hide introns if exons are present! Remove...	blob \| commitdiff \| diff to current
2016-04-11	gmungoc	JAL-2051 fetch Ensembl Gene accessions one at a time	blob \| commitdiff \| diff to current
2016-04-11	gmungoc	JAL-1705 (new preference option to) hide introns when...	blob \| commitdiff \| diff to current
2016-03-15	gmungoc	JAL-2016 FeatureSettingsI now FeatureSettingsModelI	blob \| commitdiff \| diff to current
2016-02-22	gmungoc	JAL-1705 first pass at applying preset feature colourin...	blob \| commitdiff \| diff to current
2016-02-19	gmungoc	JAL-1705 more lenient test for 'sequence retrieved'	blob \| commitdiff \| diff to current
2016-02-12	gmungoc	JAL-1705 various refactoring towards Uniprot-to-Ensembl...	blob \| commitdiff \| diff to current
2016-01-28	gmungoc	Merge branch 'develop' into JAL-1705_trialMerge	blob \| commitdiff \| diff to current
2016-01-08	gmungoc	JAL-1705 DbSourceProxy properties converted to methods...	blob \| commitdiff \| diff to current
2016-01-05	gmungoc	Merge remote-tracking branch 'origin/features/JAL-1705_...	blob \| commitdiff \| diff to current
2015-11-21	gmungoc	JAL-653 JAL-1968 FeaturesFile now handles Jalview or...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-15	Jim Procter	Merge branch 'develop' into features/JAL-1705_ensembl	blob \| commitdiff \| diff to current
2015-10-15	tcofoegbu	JAL-1479 refactored SequenceI interface - changed getDB...	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-08-13	tcofoegbu	JAL-1826 bug fix to select pdb sequence fetcher via...	blob \| commitdiff \| diff to current
2015-06-28	Jim Procter	JAL-1705 refactored code for dbsource reggae validator...	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-1780 JAL-653 Format/AppletFormat import and export...	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-653 JAL-1780 reorder imports	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	Clear status bar message when initialisation complete	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-15	Charles Ofoegbu	JAL-1667 updated test and internationalization messages	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-04	Charles Ofoegbu	JAL-1668 First version JAL-1668	blob \| commitdiff \| diff to current
2015-03-02	Charles Ofoegbu	house keeping	blob \| commitdiff \| diff to current
2015-02-26	Charles Ofoegbu	JAL-1667 PDBe Search Interface implementation	blob \| commitdiff \| diff to current
2015-02-19	gmungoc	JAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-09-26	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
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