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Resolved diffs from 2.8.3
[jalview.git] / src / jalview / gui /
2015-04-21 tcofoegbuResolved diffs from 2.8.3 tree | commitdiff
2015-03-31 gmungocJAL-1681 ensure cDNA consensus computed on startup... tree | commitdiff
2015-03-25 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-03-25 gmungocJAL-1264 adding show/hide annotation options to applet tree | commitdiff
2015-03-25 tcofoegbuMerge branch 'features/JAL-1667_PDBe_Search_API' into... tree | commitdiff
2015-03-25 tcofoegbuJAL-1667 clean up commented codes in PopupMenu.java... tree | commitdiff
2015-03-25 tcofoegbuMerge commit tree | commitdiff
2015-03-25 tcofoegbuJAL-1668 Tab for summary config, auto refresh after... tree | commitdiff
2015-03-23 gmungocJAL-845 restore SplitFrame size from project; enable... tree | commitdiff
2015-03-23 gmungocMerge branch 'features/sequenceFeatureRefactor' into... tree | commitdiff
2015-03-19 gmungocJAL-845 fix bug in 3-to-1 scaling of protein from cDNA tree | commitdiff
2015-03-18 gmungocJAL-845 adjust both sides of split frame when changing... tree | commitdiff
2015-03-18 Charles OfoegbuJAL-1668 added PDBDocFieldPreference for configuring... tree | commitdiff
2015-03-17 gmungocJAL-1687 ignore case when determining if sequence match... tree | commitdiff
2015-03-16 gmungocJAL-845 tweaks and bug fixes for split frame view tree | commitdiff
2015-03-16 Charles OfoegbuJAL-1668 added validation for manual entry of pdb struc... tree | commitdiff
2015-03-15 Charles OfoegbuJAL-1667 updated test and internationalization messages tree | commitdiff
2015-03-12 gmungocJAL-1544 sequece now sequence tree | commitdiff
2015-03-11 gmungocJAL-845 start cDNA consensus on 'add alignment' (as... tree | commitdiff
2015-03-11 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-03-11 gmungocJAL-845 smarter test for 'mappability' when adding... tree | commitdiff
2015-03-10 gmungocJAL-1681 show cDNA consensus on protein alignment ... tree | commitdiff
2015-03-09 Jim ProcterMerge branch 'features/JAL-1565_jpred4' into develop tree | commitdiff
2015-03-09 Jim ProcterJAL-1565 loading a concise file causes insertions to... tree | commitdiff
2015-03-06 Charles OfoegbuJAL-1668 added filtering and sorting capabilites tree | commitdiff
2015-03-06 Jim ProcterMerge branch 'develop' into features/JAL-845splitPaneMe... tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-03-06 Charles OfoegbuJAL-1667 refactoring to support JAL-1668 tree | commitdiff
2015-03-04 Charles OfoegbuJAL-1668 First version JAL-1668 tree | commitdiff
2015-03-04 gmungocJAL-845 bug fixes correcting linked editing tree | commitdiff
2015-03-03 gmungocJAL-845 refactor / typo fix tree | commitdiff
2015-03-03 gmungocJAL-845 implement alignment of protein to match cDNA... tree | commitdiff
2015-03-03 gmungocJAL-1452 nucleotide/protein default colour; JAL-845... tree | commitdiff
2015-03-02 Charles Ofoegbuhouse keeping tree | commitdiff
2015-02-27 gmungocJAL-1452 distinct colour preferences for nucleotide... tree | commitdiff
2015-02-27 gmungocJAL-845 SplitFrame for "show product" and after alignin... tree | commitdiff
2015-02-26 Charles OfoegbuJAL-1667 PDBe Search Interface implementation tree | commitdiff
2015-02-25 gmungocJAL-1677 commenting use of AlignViewport.gatherViewsHere tree | commitdiff
2015-02-24 gmungocJAL-845 set top and bottom seq id widths the same tree | commitdiff
2015-02-24 gmungocJAL-1677 save/restore SplitFrame to Jalview project tree | commitdiff
2015-02-23 gmungocJAL-1619 split frame now offered in applet 'input from... tree | commitdiff
2015-02-20 gmungocJAL-1674 update both status bars when mousing over... tree | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor tree | commitdiff
2015-02-19 gmungocJAL-845 applet colour by tree; translate as cDNA; pull... tree | commitdiff
2015-02-13 gmungocJAL-845 first rough applet SplitFrame (add parameter... tree | commitdiff
2015-02-12 gmungocJAL-1633 set file format on 'translate cDNA' tree | commitdiff
2015-02-12 gmungocMerge remote-tracking branch 'origin/merge/JAL-845_JAL... tree | commitdiff
2015-02-11 gmungocJAL-845 handling eXpand/Gather split frame views tree | commitdiff
2015-02-11 Jim ProcterJAL-1655 JAL-845 special support to set column width... tree | commitdiff
2015-02-11 Jim ProcterJAL-845 avoid OOBException when method is called with... tree | commitdiff
2015-02-11 Jim ProcterJAL-969 use AlignViewportI interface instance where... tree | commitdiff
2015-02-11 Jim ProcterJAL-1654 allow font to be specified without modifying... tree | commitdiff
2015-02-10 Jim Procternote about preserving/reinstating custom grid geometry... tree | commitdiff
2015-02-10 Jim ProcterJAL-1640 make font-size changes modify grid size again tree | commitdiff
2015-02-10 Jim ProcterJAL-845 - portability patch - workaround for lastToken... tree | commitdiff
2015-02-10 Jim ProcterJAL-845 @mungoc TODO comments - addAlignment needs... tree | commitdiff
2015-02-10 Jim ProcterJAL-966 @mungo TODO complete: List rather than bare... tree | commitdiff
2015-02-09 Jim ProcterMerge branch 'features/JAL-845splitPaneMergeDevelop... tree | commitdiff
2015-02-09 Jim ProcterMerge branch 'develop' into JAL-1640_stylesettings tree | commitdiff
2015-02-09 gmungocMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2015-02-06 gmungocJAL-845 further code/tests/refactoring tree | commitdiff
2015-02-06 Jim ProcterJAL-1640 new menu allowing view settings to be transfer... tree | commitdiff
2015-02-06 Jim ProcterJAL-1640 Desktop.getAlignmentPanel and Desktop.getViewp... tree | commitdiff
2015-02-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-02-06 Jim ProcterJAL-1640 more properties moved to style bean and ration... tree | commitdiff
2015-02-06 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-02-06 Jim ProcterJAL-1640 JAL-966 is for boolean getter on AlignViewportI tree | commitdiff
2015-02-03 gmungocJAL-845 SplitFrame key bindings delegation to AlignFram... tree | commitdiff
2015-02-03 gmungocJAL-845 preparation for awareness of AlignFrame in... tree | commitdiff
2015-02-03 gmungocJAL-845 code/refactoring/tests related to linking DNA... tree | commitdiff
2015-02-02 Jim ProcterJAL-966 allow access to viewport interface from alignPanel tree | commitdiff
2015-02-02 Charles OfoegbuMerge commit tree | commitdiff
2015-02-02 Charles OfoegbuJAL-1644 revised Finder's implementation to use a flag... tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 JAL-1551 formatting/imports/remove dead code tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 updates to use get/setter on viewportI: effici... tree | commitdiff
2015-02-02 Jim ProcterJAL-1640 separated style operations into a new ViewStyl... tree | commitdiff
2015-01-30 gmungocJAL-845 linked protein/dna 'slave' further PoC function... features/JAL-845linkedProteinDnaEditing tree | commitdiff
2015-01-27 gmungocJAL-1588 new class renamed tree | commitdiff
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... tree | commitdiff
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) tree | commitdiff
2015-01-23 gmungocJAL-1588 first working (?) restore of Chimera session... tree | commitdiff
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method tree | commitdiff
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checki... tree | commitdiff
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... tree | commitdiff
2015-01-23 gmungocJAL-1635 show warning if less than 3 columns selected... tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples... tree | commitdiff
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour... tree | commitdiff
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column... tree | commitdiff
2015-01-22 gmungocJAL-1619 refactoring / tests to support 'align linked... tree | commitdiff
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... tree | commitdiff
2015-01-20 Charles OfoegbuFurther abstractions and clean up tree | commitdiff
2015-01-20 Charles Ofoegbubasic house keeping tree | commitdiff
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation... tree | commitdiff
2015-01-19 gmungocJAL-1619 refactored cDNA translation; modified codon... tree | commitdiff
2015-01-19 gmungocJAL-1636 fix for mouseover of 'X' in translated protein tree | commitdiff
2015-01-18 Jim ProcterJAL-1372 i18n and tweaking set/unset representative... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence... tree | commitdiff
2015-01-18 gmungocJAL-1619 refactoring wip tree | commitdiff
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