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JAL-966 @mungo TODO complete: List rather than bare int array
[jalview.git]
/
src
/
jalview
/
gui
/
2015-02-10
Jim Procter
JAL-966 @mungo TODO complete: List rather than bare...
tree
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commitdiff
2015-02-09
Jim Procter
Merge branch 'features/JAL-845splitPaneMergeDevelop...
tree
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commitdiff
2015-02-09
Jim Procter
Merge branch 'develop' into JAL-1640_stylesettings
tree
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commitdiff
2015-02-09
gmungoc
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2015-02-06
gmungoc
JAL-845 further code/tests/refactoring
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 new menu allowing view settings to be transfer...
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 Desktop.getAlignmentPanel and Desktop.getViewp...
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 more properties moved to style bean and ration...
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-02-06
Jim Procter
JAL-1640 JAL-966 is for boolean getter on AlignViewportI
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 SplitFrame key bindings delegation to AlignFram...
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 preparation for awareness of AlignFrame in...
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 code/refactoring/tests related to linking DNA...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-966 allow access to viewport interface from alignPanel
tree
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commitdiff
2015-02-02
Charles Ofoegbu
Merge commit
tree
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commitdiff
2015-02-02
Charles Ofoegbu
JAL-1644 revised Finder's implementation to use a flag...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 JAL-1551 formatting/imports/remove dead code
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 updates to use get/setter on viewportI: effici...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 separated style operations into a new ViewStyl...
tree
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commitdiff
2015-01-30
gmungoc
JAL-845 linked protein/dna 'slave' further PoC function...
features/JAL-845linkedProteinDnaEditing
tree
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commitdiff
2015-01-27
gmungoc
JAL-1588 new class renamed
tree
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
tree
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commitdiff
2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
tree
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commitdiff
2015-01-23
gmungoc
JAL-1588 first working (?) restore of Chimera session...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 hasHiddenRows is now an interface method
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 drop the hiddenColumns flag in favour of checki...
tree
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commitdiff
2015-01-23
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-23
gmungoc
JAL-1635 show warning if less than 3 columns selected...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 JAL-962 formatting and code change ripples...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
tree
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commitdiff
2015-01-22
Charles Ofoegbu
JAL-1553 added applet support for the select-column...
tree
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commitdiff
2015-01-22
gmungoc
JAL-1619 refactoring / tests to support 'align linked...
tree
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commitdiff
2015-01-21
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-20
Charles Ofoegbu
Further abstractions and clean up
tree
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commitdiff
2015-01-20
Charles Ofoegbu
basic house keeping
tree
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commitdiff
2015-01-20
Charles Ofoegbu
JAL-1553 enhancement of column selection by annotation...
tree
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commitdiff
2015-01-19
gmungoc
JAL-1619 refactored cDNA translation; modified codon...
tree
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commitdiff
2015-01-19
gmungoc
JAL-1636 fix for mouseover of 'X' in translated protein
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1372 i18n and tweaking set/unset representative...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 employ new AnnotationFile reader method to...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 method to hide insertions to current sequence...
tree
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commitdiff
2015-01-18
gmungoc
JAL-1619 refactoring wip
tree
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commitdiff
2015-01-16
gmungoc
JAL-1619 refactoring in progress for Dna translation
tree
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commitdiff
2015-01-14
gmungoc
JAL-1619 modified repaint after 'Align As' action
tree
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commitdiff
2015-01-14
Charles Ofoegbu
Merge branch 'features/JAL-1553_select-columns-by-annot...
tree
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commitdiff
2015-01-14
Charles Ofoegbu
Modified AnnotationColumnChooser to maintain state...
features/JAL-1553_select-columns-by-annotation
tree
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commitdiff
2015-01-13
Charles Ofoegbu
Merge branch 'features/JAL-1553_select-columns-by-annot...
tree
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commitdiff
2015-01-13
Charles Ofoegbu
Refactored AnnotationColumnChoser and AnnotationColorCh...
tree
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commitdiff
2015-01-12
gmungoc
JAL-1619 load/align cDNA for protein (wip)
tree
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commitdiff
2015-01-10
Charles Ofoegbu
JAL-1553 merge commit
tree
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commitdiff
2015-01-10
Charles Ofoegbu
JAL-1553 implementation of column selection by annotati...
tree
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commitdiff
2015-01-09
Jim Procter
Merge branch 'JAL-1372_referenceseq' into feature_29...
tree
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commitdiff
2015-01-09
gmungoc
JAL-1588 check Chimera session file still exists
tree
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commitdiff
2015-01-08
gmungoc
JAL-1588 part work save/restore of Chimera session
tree
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commitdiff
2015-01-07
Jim Procter
Merge branch 'develop' into JAL-1483_29dev
tree
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commitdiff
2015-01-07
Jim Procter
JAL-1483 refactor NJTree constructor to allow preconfig...
tree
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commitdiff
2015-01-07
Jim Procter
JAL-1483 organise imports
tree
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commitdiff
2015-01-07
gmungoc
JAL-1551 formatting applied
tree
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commitdiff
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
tree
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commitdiff
2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
tree
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commitdiff
2015-01-04
gmungoc
JAL-1619 first draft of 'linked protein and cDNA'
tree
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commitdiff
2014-12-28
gmungoc
Merge branch 'features/JAL-1596ChimeraREST' into develop
tree
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commitdiff
2014-12-28
gmungoc
JAL-845 first working linked edit protein -> cDNA
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-09
gmungoc
JAL-1616 loading of datasets from XML patched
tree
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commitdiff
2014-12-09
gmungoc
JAL-1616 loading of datasets from XML patched
Release_2_8_2_Branch
tree
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commitdiff
2014-12-08
Charles Ofoegbu
merge commit
tree
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commitdiff
2014-12-08
Charles Ofoegbu
JAL-1613 hotfix for duplicated sequence after pairwise...
tree
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commitdiff
2014-12-08
Charles Ofoegbu
JAL-1613 hotfix for duplicated sequence after pairwise...
tree
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commitdiff
2014-12-05
Charles Ofoegbu
Merge branch 'features/JAL-1605_html-svg-export' into...
tree
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commitdiff
2014-12-05
Charles Ofoegbu
JAL-1605 added command line support for html export...
tree
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commitdiff
2014-12-05
Charles Ofoegbu
JAL-1605 merge commit
tree
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commitdiff
2014-12-05
Charles Ofoegbu
Change the Html export to utilize svg
tree
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commitdiff
2014-12-05
gmungoc
JAL-1609 refactored colour by sequence command, now...
tree
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commitdiff
2014-12-01
Jim Procter
Merge branch 'bug/JAL-1610refAnnotationsInViews' into...
tree
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commitdiff
2014-12-01
Jim Procter
Merge branch 'bug/JAL-1610refAnnotationsInViews' into...
tree
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commitdiff
2014-11-28
Jim Procter
Merge branch 'JAL-1517_release282' into develop
tree
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commitdiff
2014-11-28
gmungoc
JAL-1610 check reference annotations against alignment...
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1517 formatting
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1611 revise log level to reduce verbosity
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1583 javadoc and fix constructor signature
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1604 formatting
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1604 revised wording and internationalised dialog
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1583 refactored addInternalFrame to allow webservic...
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1517 formatting/tidy
tree
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...
tree
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into develop
tree
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commitdiff
2014-11-27
Jim Procter
JAL-1177 JAL-905 cannot recover sequences from dataset...
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 avoid writing \0 for chain code
tree
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into develop
tree
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...
tree
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commitdiff
2014-11-27
gmungoc
JAL-1603 if Chimera selected in Preferences, warn if...
tree
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commitdiff
2014-11-27
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 JAL-966 new method to retrieve all views
tree
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commitdiff
2014-11-27
Jim Procter
JAL-966 promote getName to an api method
tree
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commitdiff
2014-11-27
Charles Ofoegbu
Merge branch 'bug/JAL-1604_Entire-alignment-submission...
tree
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commitdiff
2014-11-27
Charles Ofoegbu
JAL-1604 Entire sequence submision for MSA job bugfix
tree
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commitdiff
2014-11-27
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-26
Charles Ofoegbu
Merge branch 'bug/JAL-207_pairwise-alignment-context...
tree
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commitdiff
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