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JAL-3066 Fix NullPointerException thrown when showing HMMER run dialog
[jalview.git]
/
src
/
jalview
/
io
/
FileLoader.java
2020-12-14
Jim Procter
Merge branch 'Jalview-JS/develop' into merge_js_develop
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2020-06-12
BobHanson
JAL-3446 from applet -- reload; also fixes some repaint...
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diff to current
2020-06-03
BobHanson
JAL-3446 from JAL-3253 ApplicationSingletonProvider...
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2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet web page embedding
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diff to current
2020-05-18
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
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2020-04-21
gmungoc
JAL-3603 load annotation file from RELATIVE_URL in...
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diff to current
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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diff to current
2019-06-06
tva
JAL-3285 fix FileLoader failing to load HMMER file
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diff to current
2019-06-04
Jim Procter
Merge branch 'develop' into developtomchmmer
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diff to current
2019-04-18
hansonr
explicit Hashtable objects
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diff to current
2019-04-17
gmungoc
JAL-3026 fix bug loading Jalview Project (in Java)
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diff to current
2019-03-27
hansonr
consolidation of Platform isJS calls
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diff to current
2019-03-19
Ben Soares
JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
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2019-03-01
gmungoc
Merge branch 'feature/JAL-3093wrappedModeTooltips'...
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2018-12-13
Ben Soares
JAL-3130 Attempting to fix 8 tests that pass on a Mac...
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2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
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diff to current
2018-11-06
hansonr
JAXB marshalling by JavaScript successfully unmarshalle...
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diff to current
2018-11-02
hansonr
Marshalling produces valid ZIP file. Unmarshalling...
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diff to current
2018-10-17
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...
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2018-10-04
gmungoc
JAL-3132 set status message when over sequence id or...
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2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
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2018-08-27
hansonr
JAL-3026 alignmentFrame.statusBar.setText -> .setStatus
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2018-08-24
hansonr
JAL-3026 GD#107,128,130,139 build-site.xml
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diff to current
2018-07-02
hansonr
JAL-3026 File...Reload working
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2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
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2018-06-27
hansonr
JAL-3032 part2 local file reading by JFileChooser
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2018-06-20
gmungoc
JAL-3032 simplified _LoadFileWaitTillLoaded with no...
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2018-06-20
hansonr
JAL-3032 FileLoader fixes for SwingJS
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2018-05-29
gmungoc
JAL-3005 refactor updateRecentlyOpened to enable reuse
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2018-04-17
gmungoc
JAL-2629 choice of hmm profile now a parameter not...
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2018-04-16
gmungoc
JAL-2629 JAL-2937 remove redundant is/setHMMConsensusSe...
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2018-03-30
gmungoc
JAL-2941 'map hmm to RF' removed pending clarifications
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2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-09-01
gmungoc
JAL-2488 remove finalize methods
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2017-08-29
osboxes
JAL-2629 HMMs dropped on the alignment now map to the...
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2017-08-28
TZVanaalten
JAL-2629 fix issue where HMM would not be added to...
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2017-08-25
TZVanaalten
JAL-2629 add multiple options for running hmmbuild...
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2017-08-25
TZVanaalten
JAL-2629 fix for NPE caused by incorrect initiation...
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2017-08-23
tzvanaalten
JAL-2629 selected HMM is now a sequence, not a HMM
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2017-08-18
TZVanaalten
Merge branch 'develop' into features/hmmer
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2017-08-17
TZVanaalten
JAL-2629 add documentation to previous work
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-08-15
tzvanaalten
JAL-2629 fix file loading issues on Mac
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2017-08-15
TZVanaalten
JAL-2629 selected HMM name now shown in HMMER menu
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diff to current
2017-08-14
TZVanaalten
JAL-2629 add insert sequence at method on alignment
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diff to current
2017-08-14
TZVanaalten
JAL-2629 fix incorrect gap insertions on HMM sequence
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diff to current
2017-08-13
TZVanaalten
JAL-2629 fix issue where HMM sequences would be too...
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2017-08-11
TZVanaalten
JAL-2599 HMMs can now be dropped onto the desktop
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
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2017-05-26
tcofoegbu
JAL-2465 Improvement to re-instate storing recently...
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2017-05-26
tcofoegbu
JAL-2465 fix to prevent files loaded from the system...
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2017-05-15
tcofoegbu
JAL-2520 improvement to use URL leaf name for creating...
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diff to current
2017-05-09
tcofoegbu
JAL-2520 improvement to download and update structure...
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2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
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2017-01-11
gmungoc
JAL-2344 separated AlignmentFileI into AlignmentFileRea...
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diff to current
2017-01-11
gmungoc
JAL-2344 FileFormats singleton for formats, FileFormatI...
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2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-25
gmungoc
JAL-2344 use .equals() to compare FileFormatI objects
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2016-11-24
tcofoegbu
JAL-2326 updated references of JOptionPane to JvOptionPane
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2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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diff to current
2016-07-12
gmungoc
FileFormat enum wip changes
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diff to current
2016-07-11
gmungoc
file format enum wip changes
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diff to current
2016-03-23
tcofoegbu
JAL-2009 added programmatic custom feature setting...
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diff to current
2015-12-22
gmungoc
JAL-653 set showSequenceFeatures=true on loading a...
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2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
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diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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diff to current
2015-10-05
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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2015-09-29
tcofoegbu
JAL-1896 fixed NPE for RNA Helice without equivalent...
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diff to current
2015-09-28
tcofoegbu
JAL-1896 revised implementation to construct a ColourSc...
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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diff to current
2015-09-02
gmungoc
JAL-1355 User error text externalised to message bundle
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diff to current
2015-08-21
tcofoegbu
JAL-1443 bug fix for loading pasted alignments from...
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diff to current
2015-08-07
tcofoegbu
JAL-1824 updated caching procedure for pdb entries...
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diff to current
2015-07-30
tcofoegbu
JAL-1443 modified exception notifications
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diff to current
2015-07-21
tcofoegbu
JAL-1443 bugfix to prevent loading of unidentifiable...
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diff to current
2015-07-08
gmungoc
JAL-1759 merge from develop
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diff to current
2015-07-02
tcofoegbu
JAL-1443 data validation for empty content before loadi...
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diff to current
2015-06-30
tcofoegbu
JAL-1641 round trip test/refactoring
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2015-06-25
Jim Procter
JAL-1780 JAL-653 JAL-1892 brackets in wrong place broke...
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2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
features/JAL-653_gffalignments
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2015-06-15
Jim Procter
JAL-1775 FileLoader javadoc
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diff to current
2015-06-15
Jim Procter
JAL-1775 fix regression from commit 70f9c4700f20a8fa57e...
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commitdiff
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diff to current
2015-06-12
tcofoegbu
JAL-1641 refactor
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commitdiff
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diff to current
2015-06-05
tcofoegbu
JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
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diff to current
2015-06-05
Jim Procter
JAL-653 JAL-966 TODO and avoid NPE when desktop instanc...
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diff to current
2015-05-20
tcofoegbu
JAL-1541 minor code clean up, and added test for BioJsH...
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diff to current
2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
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diff to current
2015-05-11
tcofoegbu
JAL-1641 cherry-picked changes into develop compatible...
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2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
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diff to current
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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diff to current
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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