JAL-2473 revised default minimum dimension for Alignment Frame windows
[jalview.git] / src / jalview / io /
2017-06-01 Jim ProcterMerge branch 'features/JAL-1648_cache_user_inputs'...
2017-05-31 tcofoegbuFixed failing tests
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-29 Jim ProcterJAL-2533 update javadoc features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url
2017-05-26 tcofoegbuJAL-2465 Improvement to re-instate storing recently...
2017-05-26 tcofoegbuJAL-2465 fix to prevent files loaded from the system...
2017-05-25 Jim ProcterMerge branch 'develop' into features/JAL-1648_cache_use...
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
2017-05-15 Jim ProcterJAL-2507 capitalisation for annotation lines generated...
2017-05-15 Jim ProcterJAL-2507 case insensitive recognition of annotation...
2017-05-15 Jim ProcterJAL-2535 quick hack to implement posterior probabilitie...
2017-05-15 tcofoegbuJAL-2520 improvement to use URL leaf name for creating...
2017-05-15 tcofoegbuJAL-2533 improvement to prune off file extension when...
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
2017-05-11 Jim ProcterJAL-2509 JAL-2507 allow whitespace in GS annotation...
2017-05-09 Jim ProcterJAL-2509 extend set of brackets recognised by stockholm...
2017-05-09 tcofoegbuJAL-2520 improvement to download and update structure...
2017-05-09 Jim ProcterJAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS...
2017-05-09 Jim ProcterJAL-2507 output secondary structure regardless of prese...
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 tcofoegbuJAL-2484 adjusted default cache settings panel's left...
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-04 tcofoegbuJAL-1648 improvements: enter key closes the popup and...
2017-05-04 tcofoegbuJAL-1648 resolved CR-JAL-41 review issues
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types...
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota...
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside...
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-25 tcofoegbuJAL-2489 bug fix
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop
2017-04-24 tcofoegbuJAL-1648 House keeping
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected...
2017-04-24 tcofoegbuJAL-1648 added unit test for AppCache
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-04-20 tcofoegbuJAL-2484 minor house-keeping
2017-04-20 tcofoegbuJAL-2484 minor house-keeping and code docs
2017-04-20 tcofoegbuJAL-2484 added improvement to enable clearing cache...
2017-04-20 tcofoegbuJAL-1648 refactored and improved caching architecture...
2017-04-11 tcofoegbuJAL-1648 Fix review issue - remove usage of String...
2017-04-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2017-04-03 tcofoegbuJAL-1648 Added improvement to persist cache items to...
2017-03-28 gmungocJAL-2416 more test coverage of matrix parser
2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex...
2017-03-27 gmungocJAL-2416 class Javadoc updates prior to parsing changes
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin...
2017-03-24 gmungocJAL-1632 TreeChooser renamed CalculationChooser, text...
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree...
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect...
2017-02-21 gmungocJAL-2416 support roundtrip print/parse of ScoreMatrix
2017-02-17 gmungocJAL-2416 allow space in score matrix name
2017-02-17 gmungocJAL-2403 constants for "NJ", "AV"
2017-02-14 gmungocParsing moved to (new) ScoreMatrixFile, drag and drop...
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead...
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-11 gmungocJAL-2344 addSequence() method added to support Groovy...
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-21 gmungocJAL-2360 tidy spelling and file contents order only
2016-12-16 Jim ProcterJAL-2360 report line number when threshold cannot be...
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-08 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-12-07 gmungocJAL-2344 handle null format, simplify JalviewFileChoose...
2016-12-02 tcofoegbuJAL-1648 made further abstraction and createda new...
2016-12-01 tcofoegbuJAL-1648 Implemented in-memory caching for FTS (Uniprot...
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-29 gmungocJAL-2344 FileFormat.isStructureFile replaces
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring...
2016-11-28 gmungocJAL-2344 added FileFormatI.isStructureFile()
2016-11-28 gmungocJAL-2345 cache generated ImageIcon per file path
2016-11-25 gmungocJAL-2344 dynamically determine recognised extensions...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocJAL-2344 override to ignore (obsolete?) JalviewFileView
2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects
2016-11-24 gmungocDistinguish text-only output formats and others (.jar...
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-24 gmungocFurther tweaks to get tests passing
2016-11-24 gmungocFileFormatI further tweaks, clean compile
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop
2016-11-23 Jim ProcterMerge branch 'documentation/JAL-2325_release2101' into...
2016-11-23 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-22 Jim ProcterJAL-2197 changed tooltip for Jnet annotation rows to...
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