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Merge: 497958b 68dcaa7
[jalview.git] / src / jalview / io /
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc tree | commitdiff
2014-11-12 Charles OfoegbuExcluded HtmlFile.java dependencies from AppletFomatAdapter tree | commitdiff
2014-11-12 Charles OfoegbuModified biojs exporter/importer to preserve SequenceFe... tree | commitdiff
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to clean up and close... tree | commitdiff
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to use class loader while... tree | commitdiff
2014-11-06 Charles OfoegbuChanges from JAL-1541 patch tree | commitdiff
2014-11-06 Charles OfoegbuUpdated BioJs Html to be capable of launching jalivew tree | commitdiff
2014-11-06 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export... tree | commitdiff
2014-10-31 Charles OfoegbuJAL-1541 upadated BioJs emmitter to store alignment... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved... tree | commitdiff
2014-10-30 Jim ProcterJAL-1551 format and tidy tree | commitdiff
2014-10-30 Charles OfoegbuJAL-1541 BioJs MSA Viewer export option implementation tree | commitdiff
2014-10-15 Jim ProcterJAL-674 always try to extract secondary structure when... tree | commitdiff
2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static tree | commitdiff
2014-10-10 Jim ProcterJAL-674 change jalview.io.AlignFile to allow parsing... tree | commitdiff
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip... tree | commitdiff
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support tree | commitdiff
2014-09-26 darolmarJAL-1355 tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1486 JAL-1543 pushed alignment viewport->view-... tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1199 add stockholm output to list of AppletFormatAd... tree | commitdiff
2014-08-08 j.procter@dundee... JAL-1482 feature renderer and manipulation code refacto... tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-06-03 Jim ProcterJAL-690 JAL-1503 update file types/extensions in Jalvie... tree | commitdiff
2014-06-03 Jim ProcterJAL-690 add .jvp as default jalview project filetype tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into develop tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8... tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8... tree | commitdiff
2014-04-23 Jim ProcterJAL-1486 todo for 2.8.2 release tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim Procterfix for JAL-1438 tree | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim Procterfix for JAL-1478 tree | commitdiff
2014-02-26 Jim ProcterMerge branch 'JAL-686' into develop tree | commitdiff
2014-02-26 Jim ProcterJAL-1457 refactoring to explore why '-' appear in annot... tree | commitdiff
2014-02-26 Jim Procterfix for JAL-686 - don't trim spaces before creating... tree | commitdiff
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into develop tree | commitdiff
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into Release_2_8_1_Branch tree | commitdiff
2014-02-20 Jim ProcterJAL-1447 patch to correctly recognise FASTA files conta... tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1... tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2014-01-27 Jim ProcterJAL-1430 mfa added as a known extension for FASTA files tree | commitdiff
2014-01-13 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_... tree | commitdiff
2013-12-25 darolmarJAL-1355 (basic i18n support) tree | commitdiff
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into develop tree | commitdiff
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into Release_2_8_1_Branch tree | commitdiff
2013-11-07 Jim ProcterJAL-1286 check if local file ends with .gz and opens... tree | commitdiff
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work... tree | commitdiff
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1 tree | commitdiff
2013-08-29 darolmari18n tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'JAL-1294_iupredexportimport' into develop tree | commitdiff
2013-06-21 Jim ProcterJAL-1325 JAL-1294 resolve SEQUENCE_REF and GROUP_REF... tree | commitdiff
2013-06-21 Jim ProcterJAL-1294 JAL-1325 store graphline for individual annota... tree | commitdiff
2013-06-14 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-14 Jim ProcterMerge branch 'JAL-1316' into develop tree | commitdiff
2013-06-14 Jim ProcterJAL-1316 compact '' to ' tree | commitdiff
2013-06-14 Jim ProcterJAL-1316 recognise and extract quoted region as nodename tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into... tree | commitdiff
2013-05-24 Jim ProcterMerge branch 'menard' into develop_m2_8_1_2 tree | commitdiff
2013-05-24 Jim Procterpatch for JAL-1300 fixes JAL-1294: read and write COMBI... tree | commitdiff
2013-05-24 Jim ProcterJAL-381 Desktop.addInternalFrame cannot be called in... tree | commitdiff
2013-05-24 Jim ProcterJAL-1299 fix: ensure a new graphGroup is created if... tree | commitdiff
2013-05-24 Jim Procterfix for JAL-1297: COMBINE output now follows specificat... tree | commitdiff
2013-05-24 Jim ProcterJAL-1070 - [ not a real patch ] - include offending... tree | commitdiff
2013-05-13 Jim ProcterJAL-1286 URL stream reader tries to use a GZIPInputStre... tree | commitdiff
2013-04-12 Jim ProcterJAL-1286 URL stream reader tries to use a GZIPInputStre... tree | commitdiff
2013-02-14 Jim ProcterMerge branch 'JAL-1199-Stk_writing' into rnaml_test tree | commitdiff
2013-02-14 Jim ProcterJAL-1140 reinstate the simpler version of parsing code... tree | commitdiff
2013-02-13 Jim ProcterMerge branch 'jims_annotate3d_update' into menard_final... tree | commitdiff
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced... tree | commitdiff
2013-02-13 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data... tree | commitdiff
2013-02-11 jprocterpatch for 'This parser does not support specification... tree | commitdiff
2013-02-06 jprocterJAL-1265 basic support for parsing database accessions... tree | commitdiff
2013-02-06 jprocterJAL-1199 refactored stockholm test code from main class... tree | commitdiff
2013-02-05 jprocterformatting tree | commitdiff
2012-12-17 Natashatest for output a file in Stockholm format tree | commitdiff
2012-12-12 NatashaOutput accession number for file in stockholm format tree | commitdiff
2012-12-07 jprocterAnne's refined RNAML parser. Seems to have some bugs... tree | commitdiff
2012-12-07 jprocterAnne reinstated general stockholm parser code but exten... tree | commitdiff
2012-12-07 jprocterformatting and error report cleanup tree | commitdiff
2012-12-07 jprocterproxy commit for Anne Menard <menard.annec@gmail.com... tree | commitdiff
2012-12-04 jprocterJAL-1140 - handled VARNA specific RNA exceptions within... tree | commitdiff
2012-12-04 jprocterJAL-1140 - handle VARNA specific RNA exceptions within... tree | commitdiff
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep... tree | commitdiff
2012-12-04 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data... tree | commitdiff
2012-11-23 Natashastockholm file output code developed by Natasha Sherstneva tree | commitdiff
2012-11-17 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-11-17 jprocterFileParse adapter for reading directly from inputstreams tree | commitdiff
2012-11-17 jprocterformat adapter should return AlignmentI tree | commitdiff
2012-11-17 jprocterformatting tree | commitdiff
2012-11-17 jproctersequence numbering from 1 tree | commitdiff
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