Merge branch 'develop' into features/JAL-2110_crossRefDuplications
[jalview.git] / src / jalview / io /
2015-05-07 Jim ProcterJAL-1551 formatting
2015-05-07 Jim ProcterJAL-1601 migrated the JABAWS 2.1 jpred burial represent...
2015-03-27 tcofoegbumerge commit
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim Procterreassign features already created/documented for 2...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor
2015-02-05 Charles Ofoegbumerge commit
2015-02-04 Charles OfoegbuJAL-1643 modified jalviewFileChooser to retain default...
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more...
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-23 Jim ProcterJAL-1551 formatting
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream...
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer...
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files...
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc
2015-01-14 gmungocJAL-1629 .jar option removed from Alignment File Save...
2015-01-07 Jim ProcterMerge branch 'develop' into JAL-1483_29dev
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related
2014-12-22 Charles OfoegbuPatch to synchronize title svg and allignment svg scrolling
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when...
2014-12-15 Charles Ofoegbuupdate HtmlSvgOutput to ignore browser invocation when... features/JAL-1605_html-svg-export
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-08 Charles Ofoegbumerge commit
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into...
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export...
2014-12-05 Charles Ofoegbumodified html css
2014-12-05 Charles OfoegbuJAL-1605 merge commit
2014-12-05 Charles OfoegbuChange the Html export to utilize svg
2014-12-01 Jim ProcterJAL-1199 JAL-1569 incremental patch allow non-standard...
2014-11-26 Jim ProcterMerge branch 'JAL-674_fixannotlabels' into develop
2014-11-26 Jim ProcterJAL-674 make RNAML-extracted secondary structure lines...
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_...
2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment...
2014-11-23 Jim ProcterJAL-1569 formatting
2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files...
2014-11-21 Jim ProcterJAL-674 add RNA sequence associated annotation to align...
2014-11-21 Jim ProcterJAL-1569 formatting
2014-11-21 Jim ProcterJAL-1140 sensible name for seuqences in RNAML files...
2014-11-18 Jim ProcterMerge branch 'JAL-1587_promotedisorder' into develop
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct...
2014-11-17 Charles Ofoegbucomand line support for svg generation
2014-11-14 Charles OfoegbuHouse keeping
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-11-12 Charles OfoegbuExcluded HtmlFile.java dependencies from AppletFomatAdapter
2014-11-12 Charles OfoegbuModified biojs exporter/importer to preserve SequenceFe...
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to clean up and close...
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to use class loader while...
2014-11-06 Charles OfoegbuChanges from JAL-1541 patch
2014-11-06 Charles OfoegbuUpdated BioJs Html to be capable of launching jalivew
2014-11-06 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export...
2014-10-31 Charles OfoegbuJAL-1541 upadated BioJs emmitter to store alignment...
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved...
2014-10-30 Jim ProcterJAL-1551 format and tidy
2014-10-30 Charles OfoegbuJAL-1541 BioJs MSA Viewer export option implementation
2014-10-15 Jim ProcterJAL-674 always try to extract secondary structure when...
2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static
2014-10-10 Jim ProcterJAL-674 change jalview.io.AlignFile to allow parsing...
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support
2014-09-26 darolmarJAL-1355
2014-09-23 darolmarJAL-1355
2014-09-12 j.procter@dundee... JAL-1486 JAL-1543 pushed alignment viewport->view-...
2014-09-12 j.procter@dundee... JAL-1199 add stockholm output to list of AppletFormatAd...
2014-08-08 j.procter@dundee... JAL-1482 feature renderer and manipulation code refacto...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-06-03 Jim ProcterJAL-690 JAL-1503 update file types/extensions in Jalvie...
2014-06-03 Jim ProcterJAL-690 add .jvp as default jalview project filetype
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into develop
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8...
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8...
2014-04-23 Jim ProcterJAL-1486 todo for 2.8.2 release
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into develop
2014-04-21 Jim Procterfix for JAL-1438
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop
2014-04-21 Jim Procterfix for JAL-1478
2014-02-26 Jim ProcterMerge branch 'JAL-686' into develop
2014-02-26 Jim ProcterJAL-1457 refactoring to explore why '-' appear in annot...
2014-02-26 Jim Procterfix for JAL-686 - don't trim spaces before creating...
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into develop
2014-02-20 Jim ProcterMerge branch 'JAL-1447' into Release_2_8_1_Branch
2014-02-20 Jim ProcterJAL-1447 patch to correctly recognise FASTA files conta...
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2014-01-27 Jim ProcterJAL-1430 mfa added as a known extension for FASTA files
2014-01-13 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
2013-12-25 darolmarJAL-1355 (basic i18n support)
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into develop
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