format adapter should return AlignmentI
[jalview.git] / src / jalview / io /
2012-11-17 jprocterformat adapter should return AlignmentI
2012-11-17 jprocterformatting
2012-11-17 jproctersequence numbering from 1
2012-11-17 jprocterformatting
2012-11-17 jprocterformatting
2012-11-15 jprocterallow .rnaml as a filename extension
2012-11-15 jproctercomment on jalview.io.AlignFile architecture
2012-11-15 jproctersource formatting
2012-11-15 jprocterMerge branch 'develop' into menard
2012-11-08 jproctertidy imports
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-08-31 jprocterMerge branch 'develop' into menard
2012-08-31 jprocterJAL-1015 resolve dataset sequence before searching...
2012-08-31 jprocterJAL-1015 refactor tooltip html generation code to jalvi...
2012-08-20 jprocterJAL-1140 bugfix - getDataName throws errors - prefer...
2012-08-20 jprocterJAL-1140 use the Reader provided by the jalview.io...
2012-08-14 Anne Menardlast version stay many bugs ..
2012-07-16 Anne MenardMerge branch 'develop' of https://source.jalview.org...
2012-07-10 Anne Menardv2
2012-07-05 Anne MenardAdd support RNAML format
2012-07-03 jprocterJAL-961 allow calcId to be specified independently...
2012-07-01 jprocterJAL-1117 alleviate lock starvation
2012-06-13 jprocterJAL-1116 - location where vamsas sync failure occurs
2012-06-13 jprocterjavatidy
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2012-05-24 jprocterJAL-1065 per sequence and per-alignment scores added...
2012-05-24 jprocterJAL-1065 - ensure null entries in annotation row so...
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview...
2012-05-23 jproctertodo: blocked by JAL-1104
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2012-03-02 jprocter(JAL-1052) todo for output of RNA consensus lines
2012-03-02 jprocter(JAL-1052) basic consensus line parsing to rna structur...
2012-03-02 jprocter(JAL-1052) make RNA secondary structure string parsing...
2011-10-21 jproctertodo
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-09-27 jprocterapply version 2.7 copyright
2011-08-30 jprocterensure parsing errors and 'lack of data' errors are...
2011-08-19 jprocterJAL-908 JAL-701 refactored HTML escape/unescape code...
2011-07-25 janengelhardtsome print statements to test things
2011-07-25 janengelhardtJAL-878; Additional structures with a 'GR' tag in Stock...
2011-07-25 janengelhardtJAL-841; Structure trigger token in jalview.io.Alignmen...
2011-07-25 janengelhardt'Update to Covariaton color scheme' merge; JAL-580
2011-07-25 janengelhardtStart merging of Laurens Code
2011-07-21 jprocterensure contents of hash is extended JAL-876
2011-06-24 jprocterfix to preserve sequence numbering in MSF (JAL-847)
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-02-17 jprocterclassCast exception - attempting to update registry...
2011-01-21 jprocterrelaxed ID matching parameter JAL-753
2011-01-07 jproctercheck for all http protocols
2011-01-05 jprocterJAL-727
2011-01-05 jprocterJAL-727
2010-12-17 jprocterJAL-715
2010-12-15 jprocterupdate modification state flag according to parsing...
2010-12-15 jproctergetters and modification state flag
2010-12-15 jproctermore accurate determination of annotation modification
2010-12-15 jprocterrefactored key calc for hash to separate function
2010-12-14 jprocter1.1 compat
2010-12-14 jprocter1.1 compat
2010-12-14 jprocteralways provide reference to hashtable so feature settin...
2010-12-14 jprocterrefactored and patched for JAL-721
2010-12-10 jproctermime types and handler
2010-12-09 jprocterdataIn.ready() is not a test of data source validity!
2010-12-09 jprocterinitial list of mime-type bindings to jalview data...
2010-12-09 jprocterinitial implementation for JAL-718
2010-11-14 jprocterrefactored to decouple dependencies due to FileParse...
2010-11-14 jprocterimport annotation file from datasource
2010-11-14 jprocterrefactored protocol parser and allow human readable...
2010-10-12 jprocterpatch primary issue causing JAL-664 re testing for...
2010-10-12 jprocterpatch for secondary issue in JAL-664 re parsing empty...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-09-15 jprocteradded colour by label to feature type colourspec and...
2010-08-20 jprocterwrapped code from URL retrieval tester as a function...
2010-06-14 jprocterpatch for JAL-572
2010-06-11 jprocterstockholm added as readable format (Lauren Lui commit)
2010-06-06 jprocterpatch for JAL-542
2010-06-03 jprocterpatch ensuring annotation is output correctly re *...
2010-06-03 jprocterpatch and error reports re JAL-554
2010-04-30 jprocterjalview 2.5 release banner
2010-04-29 jprocterisAligned assertion (bug 0008144)
2010-04-28 jproctergroup/annotation association
2010-04-23 jprocterskips any annotation that appears to be identical to...
2010-04-23 jprocternext attempt for Bug #36198 - appears to work reproducibly
2010-04-22 jprocternon-positional feature export in gff and features file...
2010-04-16 jprocterpatch for bug #36198 - more to follow on Monday.
2010-04-05 jprocterjavadoc, and unimplemented warning for group associated...
2010-03-26 jproctertodo for graduated feature colours
2010-03-22 jprocterSee note in Mantis bug #55537 : inconsistency between...
2010-03-18 jprocterdisabled simple blast parser for 2.4.1 release
2010-03-17 jproctersimple query anchored blast report parser (shh!)
2010-03-17 jproctersimple query anchored blast report parser (shh!)
2010-03-12 jprocter1.1 compatibility
2010-03-11 jprocternew ROWPROPERTIES statement for setting an individual...
2010-03-11 jprocterpass any warning messages to StdErr - also todo to...
2010-03-11 jprocterraise a warning if column annotation gets truncated.
2010-01-28 jprocterquick fix for very broken checkin - see Mantis bug...
2010-01-28 jproctermore rigorous annotation row content check to limit...
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