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JAL-2416 order score models by order of addition rather than name
[jalview.git] / src / jalview / io /
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-17 tcofoegbuJAL-1976 clear message if export is cancelled at 'Rende... tree | commitdiff
2016-06-17 tcofoegbuJAL-1976 improved exception handler. tree | commitdiff
2016-06-17 tcofoegbuJAL-1976 added an intermediate message between a user... tree | commitdiff
2016-06-10 tcofoegbuJAL-1479 updated SIFTS FTP download URL, added improvem... tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... tree | commitdiff
2016-05-17 tcofoegbuJAL-1270 Fixed anntatedPDBFileInputTest and updated... tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-05-09 gmungocJAL-2098 identify feature file with "<" in feature... tree | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly tree | commitdiff
2016-04-14 gmungocJAL-2041 add ID,clinical_significance to feature attrib... tree | commitdiff
2016-04-14 gmungocJAL-2041 clinical_significance shown on sequence featur... tree | commitdiff
2016-04-14 gmungocJAL-1421 typed map / lists, explicit imports, method... tree | commitdiff
2016-04-14 gmungocJAL-1270 JAL-653 use 'parse immediately' FeaturesFile... tree | commitdiff
2016-04-12 gmungocJAL-1723 tooltip dbrefs sorted and limited to two per... tree | commitdiff
2016-03-24 tcofoegbuJAL-1919 Settings to disable duplicate generation of... tree | commitdiff
2016-03-24 tcofoegbuJAL-1919 Added ability to generate temprature factor... tree | commitdiff
2016-03-24 tcofoegbufixed applet build tree | commitdiff
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... tree | commitdiff
2016-03-22 gmungocJAL-1191 isolated SequenceOntology (BioJava wrapper... tree | commitdiff
2016-03-21 tcofoegbudevelop merge tree | commitdiff
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings... tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 fixed bug causing PDBfile test failure tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 PDBfile and JmolParser refactor tree | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... tree | commitdiff
2016-02-25 gmungocJAL-2015 parse/write Jalview feature format pushed... tree | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles tree | commitdiff
2016-02-19 gmungocJAL-1705 JAL-1191 more terms added to hard-coded version tree | commitdiff
2016-02-19 gmungocJAL-1706 reverted setting start position as too confusi... tree | commitdiff
2016-02-12 gmungocJAL-1191 additions to SOLite, tweak to test tree | commitdiff
2016-02-12 gmungocJAL-1705 take feature ID for description if nothing... tree | commitdiff
2016-02-12 gmungocMerge branch 'develop' into tree | commitdiff
2016-02-09 tcofoegbumerge develop tree | commitdiff
2016-02-09 tcofoegbuJAL-1976 catch and handle OOM Error tree | commitdiff
2016-02-09 tcofoegbuJAL-1976 Added progress indicators for HTML_SVG and... tree | commitdiff
2016-02-01 gmungocJAL-1705 further unit tests tree | commitdiff
2016-02-01 gmungocJAL-1191 more terms added to SequenceOntologyLite tree | commitdiff
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-27 gmungocJAL-1705 add exon name to features and render on peptid... tree | commitdiff
2016-01-26 gmungocJAL-1705 derive transcript sequences from gene sequence... tree | commitdiff
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring tree | commitdiff
2016-01-23 gmungocJAL-1705 compute peptide variants from dna; add "conseq... tree | commitdiff
2016-01-21 gmungocJAL-653 refactor / tidy tree | commitdiff
2016-01-21 gmungocJAL-653 JAL-1705 set strand for GFF sequence feature tree | commitdiff
2016-01-21 gmungocJAL-653 comments/javadoc tidy only tree | commitdiff
2016-01-21 gmungocJAL-1796 parse ensembl genomic coordinates to set start... tree | commitdiff
2016-01-21 gmungocJAL-1705 include dummy sequences in returned alignment tree | commitdiff
2016-01-21 gmungocJAL-1705 added isSequenceVariant(), commonly used SO... tree | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... tree | commitdiff
2016-01-12 gmungocJAL-1191 cache isA (great-)grandparents as well for... tree | commitdiff
2016-01-11 tcofoegbuJAL-1991 bug fix for some flat-file printers to check... tree | commitdiff
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_... tree | commitdiff
2016-01-05 gmungocJAL-1191 check for obsolete term when descriptions... tree | commitdiff
2015-12-23 gmungocJAL-1191 zipped SO OBO file added to /resources, more... tree | commitdiff
2015-12-22 gmungocJAL-1191 and provide the SO OBO file in /resources :-) tree | commitdiff
2015-12-22 gmungocJAL-1191 SequenceOntology wrapping/caching SO.OBO via... tree | commitdiff
2015-12-22 gmungocJAL-1191 stub class for a SequenceOntology wrapper tree | commitdiff
2015-12-22 gmungocJAL-653 set showSequenceFeatures=true on loading a... tree | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes tree | commitdiff
2015-12-22 gmungocJAL-653 hold AlignedCodonFrame collections as list... tree | commitdiff
2015-11-30 gmungocJAL-652 further refactoring / tests tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-11-11 tcofoegbumerge tree | commitdiff
2015-11-10 Jim ProcterJAL-653 added missing pragma string to processing filter tree | commitdiff
2015-10-30 Jim ProcterJAL-1954 rejigged PFAMFile to split on ‘\t’ if no space... tree | commitdiff
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for... tree | commitdiff
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl tree | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 organise imports tree | commitdiff
2015-10-08 tcofoegbumerge tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting tree | commitdiff
2015-10-07 tcofoegbuJAL-1912 added documentation features/JAL-1912_biojson-per-sequence-annotation tree | commitdiff
2015-10-07 Jim ProcterMerge branch 'features/JAL-1912_biojson-per-sequence... tree | commitdiff
2015-10-05 tcofoegbuJAL-1912 house keeping tree | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into features/JAL-1912_biojson... tree | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-10-05 tcofoegbuJAL-1908 bugfix tree | commitdiff
2015-10-05 tcofoegbuJAL-1912 updated AnnotationDisplaySettingPojo tree | commitdiff
2015-10-01 tcofoegbuJAL-1912 Double.NaN breaks JSON serialization - added... tree | commitdiff
2015-10-01 tcofoegbuJAL-1912 refactor annotation refsequence assignemnt... tree | commitdiff
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other... tree | commitdiff
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent... tree | commitdiff
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc... tree | commitdiff
2015-09-25 tcofoegbuJAL-1907 bugfix for NPE while parsing a features file tree | commitdiff
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment... tree | commitdiff
2015-09-24 tcofoegbuJAL-1896 bugfix to enabled Jalview restore clustal... tree | commitdiff
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-16 tcofoegbuJAL-1486 off-by-one error bugfix tree | commitdiff
2015-09-16 tcofoegbuJAL-1881 Bugfix for annotation import from BioJS tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
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