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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / jbgui / GAlignFrame.java
2024-09-17 Jim ProcterJAL-4418 JAL-4392 show/hide group associated secondary... commit | commitdiff
2024-08-05 Jim ProcterJAL-1551 gradle spotlessApply and doc tweaks commit | commitdiff
2024-05-16 Jim ProcterMerge branch 'develop' into feature/JAL-4386_calculate_... commit | commitdiff
2024-05-15 Renia CorreyaJAL-4386 - Implementation of retrieving secondary structure commit | commitdiff
2024-05-13 Jim ProcterMerge branch 'develop' into features/JAL-518_justify_se... commit | commitdiff
2024-05-13 Renia CorreyaJAL-4386 - Implementation of substitution matrix and... commit | commitdiff
2024-04-30 Renia CorreyaJAL-4392 Merging consensus secondary structure commit | commitdiff
2023-08-18 Ben SoaresMerge branch 'improvement/JAL-4206_improve_JalviewFileC... commit | commitdiff
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use... commit | commitdiff
2023-06-13 Ben SoaresJAL-3416 Removed a few more JInternalFrame icons with... commit | commitdiff
2023-06-07 James ProcterJAL-4195 add exception handling for all image output... commit | commitdiff
2023-05-20 Ben SoaresJAL-3416 Ensure setFrameIcon(null) is set for remaining... commit | commitdiff
2023-04-22 Ben SoaresJAL-629 Test and fix --annotation --ssannotation args... commit | commitdiff
2022-09-16 Jim ProcterJAL-518 refactored groovy script into main codebase... commit | commitdiff
2022-09-16 Jim ProcterJAL-4062 copy highlighted region docs, new Alignment... commit | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 commit | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... commit | commitdiff
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge commit | commitdiff
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... commit | commitdiff
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of... commit | commitdiff
2019-03-31 hansonradds AlignFrame name jalview-alignment; commit | commitdiff
2019-03-27 hansonrallows web-page embedding commit | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... commit | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2019-03-07 gmungocMerge branch 'feature/JAL-3180colourAnnotationMenu... commit | commitdiff
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2620a... commit | commitdiff
2019-02-05 gmungocJAL-3048 JS-compatible confirm dialog on delete all commit | commitdiff
2019-01-30 gmungocJAL-3056 no export as BioJS in JalviewJS commit | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... commit | commitdiff
2019-01-21 hansonradded Platform settings separating mouse use of win... commit | commitdiff
2019-01-21 hansonradded Platform settings separating mouse use of win... commit | commitdiff
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... commit | commitdiff
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour... commit | commitdiff
2018-10-29 gmungocJAL-3144 SequenceFetcher without JDatabaseTree commit | commitdiff
2018-10-04 gmungocJAL-3132 set status message when over sequence id or... commit | commitdiff
2018-09-11 gmungocJAL-3056 offer New / Expand / Gather View in JalviewJS commit | commitdiff
2018-08-20 gmungocJAL-3032 Feature Settings menu item always enabled... commit | commitdiff
2018-08-17 gmungocJAL-3048 remove obsolete way of handling dialogs in... commit | commitdiff
2018-07-25 hansonrmerged commit | commitdiff
2018-07-23 gmungocJAL-3056 suppress menu options, and repoint Help, for... commit | commitdiff
2018-07-20 gmungocJAL-3048 revised AlignExportSettings dialog with respon... commit | commitdiff
2018-07-19 gmungocJAL-3048 revert saveAs action so it works in Javascript too commit | commitdiff
2018-07-06 hansonrJAL-3026 all tabbed panes use JavaScript option commit | commitdiff
2018-07-02 hansonrJAL-3026 Java+JavaScript fix for GD#95 commit | commitdiff
2018-07-02 hansonrJAL-3026 Java+JavaScript fix for GD#95 commit | commitdiff
2018-06-28 Jim ProcterJAL-3048 todo and JAL-3026 disable VCF support commit | commitdiff
2018-03-16 gmungocJAL-2620 alternative genetic code translation tables commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... commit | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... commit | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices commit | commitdiff
2017-03-31 gmungocJAL-1608 unused method removed commit | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups commit | commitdiff
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items... commit | commitdiff
2017-02-27 gmungocJAL-1632 dialog to calculate either Tree or PCA commit | commitdiff
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode... commit | commitdiff
2017-02-09 gmungocJAL-1608 menu entry text; enable/disable Create/Remove... commit | commitdiff
2017-02-08 gmungocJAL-2399 JAL-2400 tidy Text Colour wording, behaviour... commit | commitdiff
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact... commit | commitdiff
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project... commit | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... commit | commitdiff
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... commit | commitdiff
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items... commit | commitdiff
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... commit | commitdiff
2016-12-19 gmungocJAL-2361 select colour menu item by matching its name... commit | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, commit | commitdiff
2016-12-13 gmungocJAL-2361 adding items to applet colour menus, TCoffee... commit | commitdiff
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu commit | commitdiff
2016-12-09 gmungocJAL-1895 suppress RNA interaction colour option commit | commitdiff
2016-11-28 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-24 gmungocDistinguish text-only output formats and others (.jar... commit | commitdiff
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane commit | commitdiff
2016-11-24 gmungocFileFormatI further tweaks, clean compile commit | commitdiff
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie... commit | commitdiff
2016-11-02 Jim ProcterJAL-345 JAL-1738 menu item, AlignFrame action listener... commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting commit | commitdiff
2016-08-31 gmungocJAL-2077 test isPopupTrigger in mouseReleased or mouseC... commit | commitdiff
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message... commit | commitdiff
2016-08-23 gmungocJAL-2176 unused field / methods removed commit | commitdiff
2016-04-24 Jim ProcterJAL-2077 - reinstate popups on osx commit | commitdiff
2016-04-22 gmungocJAL-1812 JAL-2068 add Run Groovy Script to AlignFrame... commit | commitdiff
2015-12-22 gmungocJAL-391 new Calculate options to Reverse, Reverse Compl... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-10-01 tcofoegbuJAL-1912 refactor annotation refsequence assignemnt... commit | commitdiff
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other... commit | commitdiff
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch commit | commitdiff
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,... commit | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop commit | commitdiff
2015-07-07 tcofoegbuJAL-1805 test envirionment separation commit | commitdiff
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