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[jalview.git] / src / jalview / util / DBRefUtils.java

2020-05-18	gmungoc	Merge branch 'Jalview-JS/develop' into develop	blob \| commitdiff
2020-02-14	Jim Procter	fix for JAL-3529	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-02-04	hansonr	refactoring for DBMODList	blob \| commitdiff \| diff to current
2019-01-26	hansonr	removing cyclic call	blob \| commitdiff \| diff to current
2019-01-26	hansonr	Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...	blob \| commitdiff \| diff to current
2018-09-18	Jim Procter	JAL-3035 more dedasification	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2016-11-02	kiramt	JAL-2281 Use DBRefs.selectRefs to uppercase URL link...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-24	Jim Procter	Merge branch 'releases/Release_2_10_0_Branch'	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	gmungoc	Merge branch 'develop' into task/JAL-2196pdbeProperties	blob \| commitdiff \| diff to current
2016-10-03	gmungoc	JAL-2110 javadoc formatting only	blob \| commitdiff \| diff to current
2016-09-28	Jim Procter	JAL-2210 patch for when no DBRefs on sequence	blob \| commitdiff \| diff to current
2016-09-27	Jim Procter	JAL-2210 formatting	blob \| commitdiff \| diff to current
2016-09-27	Jim Procter	JAL-2210 promote direct dbrefs from verified sources...	blob \| commitdiff \| diff to current
2016-09-13	gmungoc	JAL-2196 refactor PDBEntry.getProperty,setProperty...	blob \| commitdiff \| diff to current
2016-08-30	Jim Procter	JAL-2154 always compare canonicalised DBRefEntry source...	blob \| commitdiff \| diff to current
2016-08-30	Jim Procter	JAL-2154 simplify expression	blob \| commitdiff \| diff to current
2016-08-29	Jim Procter	JAL-2154 canonical dbsources are lowercased before...	blob \| commitdiff \| diff to current
2016-08-29	Jim Procter	JAL-2154 ENA specific Ensembl canonical db prefixes	blob \| commitdiff \| diff to current
2016-07-01	gmungoc	JAL-2110 bug fixing and tidying for get cross-refs	blob \| commitdiff \| diff to current
2016-06-03	gmungoc	JAL-2110 random stuff	blob \| commitdiff \| diff to current
2016-05-20	gmungoc	JAL-2110 unit tests for and minor refactoring of CrossRef	blob \| commitdiff \| diff to current
2016-02-19	gmungoc	JAL-1705 lenient DBRef matcher added (accession id...	blob \| commitdiff \| diff to current
2016-01-29	gmungoc	JAL-1705 fetch Uniprot and PDB xrefs for Ensembl protei...	blob \| commitdiff \| diff to current
2016-01-21	gmungoc	JAL-1705 canonicalise ENSEMBL name; code tidy	blob \| commitdiff \| diff to current
2016-01-08	gmungoc	JAL-1705 DbSourceProxy properties converted to methods...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-15	Jim Procter	Merge branch 'develop' into features/JAL-1705_ensembl	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-06-28	Jim Procter	JAL-1705 refactored code for dbsource reggae validator...	blob \| commitdiff \| diff to current
2015-04-30	tcofoegbu	JAL-1717 updated the PDBEntry model and updated the...	blob \| commitdiff \| diff to current
2015-04-13	gmungoc	JAL-1693 make exon alignment for get-xref splitframe...	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-10-06	Jim Procter	JAL-1500 JAL-1265 patch to parse PDB database refs...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-18	Jim Procter	Merge branch 'JAL-1445' into develop	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2012-11-17	jprocter	store chaincode on pdbentry	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-06-19	jprocter	debug comments	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-08-01	jprocter	todo	blob \| commitdiff \| diff to current
2007-10-24	jprocter	add parsed PDB reference to sequences	blob \| commitdiff \| diff to current
2007-09-29	jprocter	javadoc	blob \| commitdiff \| diff to current
2007-09-07	jprocter	added a more general DBRef search interface	blob \| commitdiff \| diff to current
2007-07-25	jprocter	uniprot synonym	blob \| commitdiff \| diff to current
2007-07-13	jprocter	new search method for finding references like other...	blob \| commitdiff \| diff to current
2007-06-18	jprocter	1.1 methods	blob \| commitdiff \| diff to current
2007-04-30	jprocter	javadoc	blob \| commitdiff \| diff to current
2007-03-19	jprocter	New method for mapping from common database sources...	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-07-21	amwaterhouse	DBRefs now array	blob \| commitdiff \| diff to current
2006-06-08	jprocter	Introduced DbRefEntry to DasSourceCoordinateSystem...	blob \| commitdiff \| diff to current
2006-03-14	jprocter	methods for searching DBRef lists	blob \| commitdiff \| diff to current

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