source.jalview.org Git - jalview.git/history - src/jalview/util/MappingUtils.java

git://source.jalview.org / jalview.git / history

[jalview.git] / src / jalview / util / MappingUtils.java

2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	Merge branch 'develop' into update/JAL-3949_abstracted_...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2022-02-04	Jim Procter	Merge branch 'bug/JAL-3806_mappingCoversSequence_for211... bug/JAL-3806_without_shared_DS_for_2_11_2	blob \| commitdiff \| diff to current
2022-02-04	Jim Procter	JAL-3806 require mapping extent covers both sequence...	blob \| commitdiff \| diff to current
2022-02-03	Jim Procter	JAL-3806 use the covers() test for each selected sequen...	blob \| commitdiff \| diff to current
2022-02-03	Jim Procter	JAL-3806 use same logic as for mouse over highlighting...	blob \| commitdiff \| diff to current
2022-02-03	Jim Procter	JAL-3806 todo - problem seems to be Protein:Many CDS...	blob \| commitdiff \| diff to current
2022-01-28	Jim Procter	Merge branch 'merge/develop_JAL-3725' into develop	blob \| commitdiff \| diff to current
2022-01-26	Jim Procter	Merge branch 'task/JAL-3763_newDatasetForCds' into...	blob \| commitdiff \| diff to current
2022-01-26	gmungoc	JAL-3725 helper methods for computing mapped feature...	blob \| commitdiff \| diff to current
2021-10-01	gmungoc	JAL-3725 helper methods for computing mapped feature...	blob \| commitdiff \| diff to current
2021-09-16	gmungoc	JAL-3761 locateInFrom2 work in progress commit	blob \| commitdiff \| diff to current
2021-03-04	Jim Procter	Revert "Merge branch 'bug/JAL-3806_mappingCoversSequenc...	blob \| commitdiff \| diff to current
2021-02-04	gmungoc	JAL-3806 fix and test for one-to-many sequence mapping... bug/JAL-3806_mappingCoversCDS_reprise	blob \| commitdiff \| diff to current
2020-10-29	gmungoc	JAL-3700 mapped sequence group includes short (or all... patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3	blob \| commitdiff \| diff to current
2020-10-28	gmungoc	JAL-3725 helper methods for computing mapped feature...	blob \| commitdiff \| diff to current
2020-09-16	gmungoc	JAL-3700 fix for propagation of sort commands	blob \| commitdiff \| diff to current
2020-09-16	gmungoc	JAL-3700 check for 'covering' mapping when matching...	blob \| commitdiff \| diff to current
2020-08-05	gmungoc	JAL-3700 fix for propagation of sort commands	blob \| commitdiff \| diff to current
2020-08-03	gmungoc	JAL-3700 check for 'covering' mapping when matching...	blob \| commitdiff \| diff to current
2020-08-03	gmungoc	JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...	blob \| commitdiff \| diff to current
2020-07-21	gmungoc	JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...	blob \| commitdiff \| diff to current
2018-03-07	Jim Procter	Merge branch 'releases/Release_2_10_4_Branch' into...	blob \| commitdiff \| diff to current
2017-11-08	kiramt	Merge branch 'develop' into feature/JAL-2759	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-26	gmungoc	Merge branch 'develop' into features/JAL-1793VCF	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-27	kiramt	JAL-2674 Removing most calls to getHiddenColumnsCopy	blob \| commitdiff \| diff to current
2017-09-22	gmungoc	JAL-2738 extract utility method to MappingUtils	blob \| commitdiff \| diff to current
2017-09-01	gmungoc	JAL-2617 omit stop codon from synthesized CDS sequence	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-07-24	gmungoc	spike branch updated from latest features/JAL-2446	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-08	kiramt	JAL-2591 Refactor HiddenColumns to use ArrayList instea...	blob \| commitdiff \| diff to current
2017-06-08	kiramt	JAL-2591 More HiddenColumns refactoring. Tests passing.	blob \| commitdiff \| diff to current
2017-06-07	kiramt	JAL-2591 simplifying hidden columns usage	blob \| commitdiff \| diff to current
2017-04-25	kiramt	JAL-2388 Working hidden regions hide/show in desktop	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Finished split of hidden columns and selected...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-01-04	gmungoc	JAL-2371 CollectionColourScheme wraps ColourSchemeI	blob \| commitdiff \| diff to current
2016-10-28	Jim Procter	JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-09-06	gmungoc	JAL-2147 additional test coverage for findMappingsForSe...	blob \| commitdiff \| diff to current
2016-07-14	Jim Procter	JAL-2147 findMappingsBetweenSequenceAndOthers for scopi...	blob \| commitdiff \| diff to current
2016-04-01	gmungoc	JAL-1705 generalised getLength() to handle [start1...	blob \| commitdiff \| diff to current
2016-03-21	gmungoc	JAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings	blob \| commitdiff \| diff to current
2016-03-03	gmungoc	JAL-1705 include stop codons in derived CDS; support...	blob \| commitdiff \| diff to current
2016-03-01	gmungoc	JAL-1705 align CDS and peptide products to transcripts	blob \| commitdiff \| diff to current
2016-02-19	gmungoc	JAL-1705 helper method for mapping excluding stop codon	blob \| commitdiff \| diff to current
2016-01-28	gmungoc	Merge branch 'develop' into JAL-1705_trialMerge	blob \| commitdiff \| diff to current
2016-01-11	gmungoc	JAL-1989 map hidden column ranges	blob \| commitdiff \| diff to current
2015-12-22	gmungoc	JAL-653 AlignedCodonFrame collections changed from...	blob \| commitdiff \| diff to current
2015-12-03	gmungoc	JAL-653 handle reverse strand mappings also	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 licencing for new files in src	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-05-05	gmungoc	JAL-1725 first version of Jetty server / chimera select...	blob \| commitdiff \| diff to current
2015-04-23	gmungoc	JAL-845 only 'follow' sort command in coding complement...	blob \| commitdiff \| diff to current
2015-04-08	gmungoc	JAL-1691 applet SplitFrame scrolling; pull up of 5...	blob \| commitdiff \| diff to current
2015-04-07	gmungoc	JAL-1691 linked scrollling in split frame (Desktop)	blob \| commitdiff \| diff to current
2015-04-01	gmungoc	JAL-845 fixed start/end range of a mapped SequenceGroup	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current

RSS Atom