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JAL-3274 resource path correction, code tidying (constants etc)
[jalview.git]
/
src
/
jalview
/
viewmodel
/
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-10-03
gmungoc
JAL-98 use Profile to store consensus, ResidueCount...
tree
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commitdiff
2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
tree
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commitdiff
2016-09-22
gmungoc
JAL-2216 new dispose() method to null references
tree
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commitdiff
2016-09-20
gmungoc
JAL-1306 calculate Quality also when Conservation not...
tree
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commitdiff
2016-09-19
gmungoc
JAL-2172 test and code updates for readonly selection...
tree
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commitdiff
2016-09-07
Jim Procter
Merge branch 'develop' into bug/JAL-1803_JAL-2157
tree
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commitdiff
2016-09-06
gmungoc
JAL-2147 additional test coverage for findMappingsForSe...
tree
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commitdiff
2016-09-01
Jim Procter
JAL-2034 check context of selection group to catch...
tree
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commitdiff
2016-08-31
Jim Procter
JAL-2034 moved ‘isDefinedGroup’ flag to a test method...
tree
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commitdiff
2016-07-20
gmungoc
JAL-2023 stronger check for whether to start cdna consensus
tree
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commitdiff
2016-07-18
Jim Procter
Merge branch 'features/JAL-2068groovyAnnotationWorker...
tree
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commitdiff
2016-07-14
Jim Procter
fix for JAL-2147
tree
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commitdiff
2016-06-27
gmungoc
JAL-2133 refactored duplicated code to AlignmentViewport
tree
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commitdiff
2016-06-22
gmungoc
JAL-1982 defensive checks for null annotations array
tree
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-1956_featureStyles' into...
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-2068groovyAnno...
features/JAL-2068groovyAnnotationWorker
tree
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commitdiff
2016-06-02
tcofoegbu
JAL-1944 java doc update and minor house keeping
tree
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commitdiff
2016-06-01
tcofoegbu
JAL-1944 updated bugfix implementation
tree
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commitdiff
2016-05-31
tcofoegbu
JAL-1944 fix for visible seqs sometimes been replaced...
tree
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commitdiff
2016-05-27
gmungoc
JAL-1989 tightened up use of flag for 'column selection...
tree
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commitdiff
2016-05-10
gmungoc
Merge branch 'develop' into features/JAL-1956_featureStyles
tree
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commitdiff
2016-05-09
gmungoc
JAL-2018 export graduated feature colours correctly
tree
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commitdiff
2016-05-03
gmungoc
JAL-2068 minimised jalview.gui imports, test for remove...
tree
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commitdiff
2016-04-27
Jim Procter
JAL-2085 JAL-2086 fix hiddenRepSequence and new referen...
tree
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commitdiff
2016-04-14
gmungoc
JAL-1421 typed map / lists, explicit imports, method...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-969 refactor columnselection operation (during...
tree
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commitdiff
2016-03-07
gmungoc
JAL-2023 CDS sequences added to / share alignment dataset
tree
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commitdiff
2016-03-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2016-02-26
tcofoegbu
JAL-1994 updated implementation for broken tests
tree
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commitdiff
2016-02-26
tcofoegbu
JAL-1994 fix for broken tests
tree
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commitdiff
2016-02-25
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2016-02-24
gmungoc
JAL-2015 JAL-1956 rollout of FeatureColourI in place of
JAL-1956_featureStyles
tree
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commitdiff
2016-02-22
tcofoegbu
JAL-1944 bugfix for error when exporting hidden sequenc...
tree
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commitdiff
2016-02-22
gmungoc
JAL-1705 first pass at applying preset feature colourin...
tree
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commitdiff
2016-02-12
gmungoc
JAL-2008 avoid unnecessary repaints; signatures changed...
tree
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commitdiff
2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
tree
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commitdiff
2016-01-11
gmungoc
JAL-1989 more unit tests and encapsulation for ColumnSe...
tree
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commitdiff
2015-12-22
gmungoc
JAL-653 realise virtual mappings and align when adding...
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-10-05
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
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commitdiff
2015-09-24
gmungoc
JAL-1904 parse feature file colours on to alignment...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in src
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-09-03
Jim Procter
JAL-961 TODO use workers for calculations supporting...
tree
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commitdiff
2015-09-03
Jim Procter
JAL-1551 source tidy
tree
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commitdiff
2015-08-17
gmungoc
JAL-1691 scan full width and depth of alignment for...
tree
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commitdiff
2015-07-23
Jim Procter
JAL-1819 use Float.isNaN() to check for NaNs!
tree
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commitdiff
2015-06-30
gmungoc
JAL-1691 trackpad scrolling goes to full width even...
tree
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commitdiff
2015-06-19
Jim Procter
JAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
tree
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commitdiff
2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
tree
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commitdiff
2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
features/JAL-653_gffalignments
tree
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commitdiff
2015-06-10
tcofoegbu
JAL-1641 updated applet version
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1482 JAL-653 refactor feature file import code...
tree
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commitdiff
2015-04-29
gmungoc
JAL-1686 ViewStyle.hashCode implemented
tree
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commitdiff
2015-04-28
gmungoc
JAL-1684 removed reflection from ViewStyle (to Junit...
tree
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commitdiff
2015-04-27
gmungoc
JAL-1691 more stable linked scrolling across split...
tree
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commitdiff
2015-04-13
gmungoc
JAL-1690 show 'scale protein' in protein _and_ dna...
tree
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commitdiff
2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
tree
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commitdiff
2015-04-02
gmungoc
JAL-1690 'scale protein as cDNA' options in Preferences...
tree
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commitdiff
2015-04-01
gmungoc
JAL-1264 reinstate Show annotations menu item
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 hasHiddenRows is now an interface method
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 drop the hiddenColumns flag in favour of checki...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 javadoc and mark interface overrides for clarity
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
tree
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commitdiff
2015-01-21
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-20
Charles Ofoegbu
Further abstractions and clean up
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 method to hide insertions to current sequence...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 wrappers for common checks on ColumnSelection
tree
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commitdiff
2015-01-09
Jim Procter
Merge branch 'JAL-1372_referenceseq' into feature_29...
tree
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commitdiff
2015-01-07
Jim Procter
JAL-1483 null features not displayed
tree
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commitdiff
2015-01-07
Jim Procter
JAL-1483 check dataset for features if none found on...
tree
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commitdiff
2015-01-07
Jim Procter
JAL-1483 organise imports
tree
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commitdiff
2015-01-07
Jim Procter
JAL-1483 making type visible also adds it to registry
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-11-17
gmungoc
JAL-1293 hide/show sequence annotations with hide/revea...
tree
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commitdiff
2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
tree
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1486 JAL-535 refactor code for trimming alignment...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1482 feature renderer and manipulation code refacto...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 move show sequence feature and sequence featur...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 abstract feature renderer model holds render...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 feature renderer settings for store/exchange...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 model and api for feature display list on...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1482 nascent feature settings model and controller...
tree
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commitdiff
2014-06-13
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-1483_featu...
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-05-02
Jim Procter
Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...
tree
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commitdiff
2014-05-01
Jim Procter
JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
tree
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commitdiff
2014-05-01
Jim Procter
JAL-961 store result of conservation analysis worker...
tree
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commitdiff
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