2021-09-29 |
Jim Procter | JAL-3884 squish alarming but harmless errors when unipr... |
tree | commitdiff |
2021-09-23 |
Jim Procter | JAL-3692 JAL-3861 remove extra call to .parse() so... |
tree | commitdiff |
2021-09-21 |
Ben Soares | JAL-3691 automatic insertion of Locale.ROOT to toUpperC... |
tree | commitdiff |
2021-09-15 |
Ben Soares | Merge branch 'develop' into merge/develop_ben2 |
tree | commitdiff |
2021-09-14 |
Jim Procter | JAL-3829 JAL-3855 ignore case when detecting alphafold ID |
tree | commitdiff |
2021-08-30 |
Jim Procter | JAL-3829 generalised Alphafold retrieval mechanism... |
tree | commitdiff |
2021-08-30 |
Jim Procter | JAL-3863 mark first accession retrieved from Uniprot... |
tree | commitdiff |
2021-08-30 |
Jim Procter | Merge branch 'feature/JAL-3855_ebi_alphafold_import... |
tree | commitdiff |
2021-08-30 |
arngucci | JAL-3829_spike minor changes |
tree | commitdiff |
2021-08-30 |
Jim Procter | JAL-3829 forgot to add in the dummy 3d-beacons db proxy |
tree | commitdiff |
2021-07-27 |
Jim Procter | JAL-3855 ALPHAFOLD database source based on the PDB... |
tree | commitdiff |
2021-02-17 |
Jim Procter | Merge branch 'feature/JAL-3692enaEndpoint' into patch... |
tree | commitdiff |
2020-08-05 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped... |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test... |
tree | commitdiff |
2020-07-21 |
gmungoc | JAL-3692 EMBL flatfile fetcher / parser (todo: CDS... |
tree | commitdiff |
2020-07-02 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for... |
tree | commitdiff |
2020-07-02 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam |
tree | commitdiff |
2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued... |
tree | commitdiff |
2019-03-13 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-01-17 |
Jim Procter | JAL-3116 clear out whitespace when materialising Sequen... |
tree | commitdiff |
2018-12-06 |
Ben Soares | JAL-3130 incorporating feature/JAL-3063jaxbNoCastor... |
tree | commitdiff |
2018-11-08 |
gmungoc | JAL-3116 better unmarshalling of EMBL/Uniprot XML |
tree | commitdiff |
2018-10-17 |
Jim Procter | Merge branch 'feature/JAL-3063JAXB' into Jalview-BH... |
tree | commitdiff |
2018-09-17 |
gmungoc | JAL-3116 unit tests adapted to EMBL over JAXB |
tree | commitdiff |
2018-09-14 |
gmungoc | JAL-3116 parse EMBL XML with JAXB (todo: update unit... |
tree | commitdiff |
2018-09-13 |
gmungoc | JAL-3116 Uniprot XML unmarshalled using JAXB not Castor |
tree | commitdiff |
2018-09-11 |
Jim Procter | Merge branch 'develop' into releases/Release_2_11_Branch |
tree | commitdiff |
2018-08-24 |
hansonr | JAL-3026 GD#107,128,130,139 build-site.xml |
tree | commitdiff |
2018-06-27 |
hansonr | JAL-3032 just the changes pulled already |
tree | commitdiff |
2018-06-26 |
Jim Procter | JAL-3035 - jalview-das is no more ! |
tree | commitdiff |
2018-06-07 |
gmungoc | JAL-2920 wrap description in <html/> if it includes... |
tree | commitdiff |
2018-06-06 |
Jim Procter | JAL-2920 revised TODO for JAL-3025 bug/JAL-2920_uniprotvariantfeature |
tree | commitdiff |
2018-06-06 |
Jim Procter | JAL-2920 don’t output variant/original sequence as... |
tree | commitdiff |
2018-06-06 |
Jim Procter | JAL-1920 JAL-3017 use newline not <br/> in description... |
tree | commitdiff |
2018-06-04 |
Jim Procter | JAL-3017 parse multiple variant elements for uniprot... |
tree | commitdiff |
2018-05-21 |
gmungoc | JAL-2920 use HGVS notation for protein variant feature |
tree | commitdiff |
2018-03-08 |
gmungoc | JAL-2885 tests updated for code changes |
tree | commitdiff |
2018-02-23 |
Jim Procter | JAL-2885 xfam https features/JAL-2885UniprotHttps |
tree | commitdiff |
2018-02-23 |
Jim Procter | JAL-2885 XFAM_DOMAIN->XFAM_BASEURL |
tree | commitdiff |
2018-02-23 |
Jim Procter | JAL-2885 renamed base URL getter from getDomain.. |
tree | commitdiff |
2018-01-16 |
gmungoc | JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... |
tree | commitdiff |
2017-11-22 |
gmungoc | JAL-2069 spike updated with latest (FeatureTypeSettings) |
tree | commitdiff |
2017-11-13 |
Jim Procter | JAL-2758 remove configurable behaviour - Uniprot sequen... |
tree | commitdiff |
2017-11-13 |
Jim Procter | JAL-2758 typo |
tree | commitdiff |
2017-10-06 |
Jim Procter | JAL-2758 flag and tests for omitting uniprot accession... features/JAL-2758_shorteruniprot |
tree | commitdiff |
2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
tree | commitdiff |
2017-09-29 |
Jim Procter | JAL-2748 formatting |
tree | commitdiff |
2017-09-29 |
Jim Procter | JAL-2745 JAL-2748 direct download of XML from uniprot.org |
tree | commitdiff |
2017-09-29 |
Jim Procter | JAL-2748 formatting |
tree | commitdiff |
2017-09-29 |
Jim Procter | JAL-2745 JAL-2748 direct download of XML from uniprot.org |
tree | commitdiff |
2017-09-03 |
Jim Procter | Merge branch 'documentation/JAL-2675_release2102b1... |
tree | commitdiff |
2017-08-22 |
Jim Procter | JAL-1551 formatting |
tree | commitdiff |
2017-08-21 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList |
tree | commitdiff |
2017-08-16 |
Jim Procter | JAL-2418 source formatting |
tree | commitdiff |
2017-08-10 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList |
tree | commitdiff |
2017-08-09 |
Jim Procter | JAL-2426 Rfam download suffix |
tree | commitdiff |
2017-08-09 |
Jim Procter | JAL-2426 JAL-1270 report Xfam download URL used if... |
tree | commitdiff |
2017-08-09 |
Jim Procter | JAL-2425 raw stockholm download URLs |
tree | commitdiff |
2017-08-09 |
Jim Procter | JAL-2425 remove overloaded getSequenceRecords method... |
tree | commitdiff |
2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
tree | commitdiff |
2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust const... |
tree | commitdiff |
2017-05-24 |
gmungoc | JAL-2506 relocate Uniprot binding classes, bind to... |
tree | commitdiff |
2017-05-16 |
gmungoc | JAL-2505 set SequenceFeature group in constructor |
tree | commitdiff |
2017-03-22 |
kiramt | JAL-2461 Removed DAS error stack trace, updated message |
tree | commitdiff |
2016-11-30 |
gmungoc | JAL-2344 use ".cif" for saved mmCIF file (and refactor... |
tree | commitdiff |
2016-11-29 |
gmungoc | JAL-2344 corrected conversion of Type enum to FileFormat features/JAL-2344FileFormatI |
tree | commitdiff |
2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
tree | commitdiff |
2016-10-24 |
Jim Procter | Merge branch 'releases/Release_2_10_0_Branch' |
tree | commitdiff |
2016-10-14 |
gmungoc | Merge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties |
tree | commitdiff |
2016-10-06 |
gmungoc | JAL-2254 map error text in root node of EMBL XML response |
tree | commitdiff |
2016-10-06 |
gmungoc | Merge branch 'develop' into task/JAL-2196pdbeProperties |
tree | commitdiff |
2016-10-06 |
gmungoc | JAL-2245 checks for null added (in case EMBL fetch... |
tree | commitdiff |
2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
tree | commitdiff |
2016-10-05 |
Jim Procter | JAL-2189 source formatting |
tree | commitdiff |
2016-10-05 |
gmungoc | Merge branch 'develop' into task/JAL-2196pdbeProperties |
tree | commitdiff |
2016-10-05 |
Jim Procter | Revert "JAL-2245 Castor mapping and code changes for... |
tree | commitdiff |
2016-10-04 |
gmungoc | Merge branch 'bug/JAL-2245enaXmlChange' into develop |
tree | commitdiff |
2016-10-04 |
gmungoc | JAL-2245 Castor mapping and code changes for change... bug/JAL-2245enaXmlChange |
tree | commitdiff |
2016-10-03 |
Jim Procter | JAL-2210 use addDBRef to ensure normalisation (just... |
tree | commitdiff |
2016-10-03 |
Jim Procter | JAL-2210 need to add both transcript and product, and... |
tree | commitdiff |
2016-10-03 |
Jim Procter | JAL-2210 JAL-2232 remove version number from ENACDS... |
tree | commitdiff |
2016-10-02 |
Jim Procter | JAL-2210 remove ENSEMBL from protein DB list: |
tree | commitdiff |
2016-10-01 |
Jim Procter | Merge branch 'develop' into bug/JAL-2210_ensembl_unipro... |
tree | commitdiff |
2016-09-29 |
gmungoc | JAL-2213 code warnings addressed (typed collections... |
tree | commitdiff |
2016-09-28 |
Jim Procter | JAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot... |
tree | commitdiff |
2016-09-07 |
Jim Procter | JAL-282 TODO - Sequence name from PDB had redundant... |
tree | commitdiff |
2016-08-30 |
gmungoc | Merge branch 'develop' into features/filetypeEnum |
tree | commitdiff |
2016-08-24 |
Jim Procter | JAL-2106 removed setSourceDBRef, refactor getSourceDBRe... |
tree | commitdiff |
2016-07-26 |
tcofoegbu | JAL-2157 bugfix for issues from enum refactoring |
tree | commitdiff |
2016-07-21 |
Jim Procter | Merge branch 'apifix/JAL-1926_JAL-2106' into develop |
tree | commitdiff |
2016-07-20 |
Jim Procter | JAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMA... |
tree | commitdiff |
2016-07-19 |
tcofoegbu | JAL-1919 set default structure file format to mmCIF... |
tree | commitdiff |
2016-07-12 |
gmungoc | FileFormat enum wip changes |
tree | commitdiff |
2016-07-11 |
gmungoc | file format enum wip changes |
tree | commitdiff |
2016-07-08 |
tcofoegbu | JAL-1919 Fixed failing tests, enabled HETATM processing... |
tree | commitdiff |
2016-06-30 |
tcofoegbu | JAL-1919 updated PDBSequenceFetcherTest and JMol parser... |
tree | commitdiff |
2016-06-20 |
gmungoc | JAL-1667 updated PDB example query to a valid id (witho... |
tree | commitdiff |
2016-05-31 |
Jim Procter | Merge branch 'develop' into features/JAL-2113_emblXml1.2 |
tree | commitdiff |
next |