JAL-2788 possible adjustments to sequence accesses
[jalview.git] / src / jalview / ws / dbsources /
2017-09-29 Jim ProcterJAL-2748 formatting
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org
2017-09-29 Jim ProcterJAL-2748 formatting
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1...
2017-08-22 Jim ProcterJAL-1551 formatting
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-10 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-08-09 Jim ProcterJAL-2426 Rfam download suffix
2017-08-09 Jim ProcterJAL-2426 JAL-1270 report Xfam download URL used if...
2017-08-09 Jim ProcterJAL-2425 raw stockholm download URLs
2017-08-09 Jim ProcterJAL-2425 remove overloaded getSequenceRecords method...
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const...
2017-05-24 gmungocJAL-2506 relocate Uniprot binding classes, bind to...
2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor
2017-03-22 kiramtJAL-2461 Removed DAS error stack trace, updated message
2016-11-30 gmungocJAL-2344 use ".cif" for saved mmCIF file (and refactor...
2016-11-29 gmungocJAL-2344 corrected conversion of Type enum to FileFormat features/JAL-2344FileFormatI
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties
2016-10-06 gmungocJAL-2254 map error text in root node of EMBL XML response
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-10-06 gmungocJAL-2245 checks for null added (in case EMBL fetch...
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-10-05 Jim ProcterRevert "JAL-2245 Castor mapping and code changes for...
2016-10-04 gmungocMerge branch 'bug/JAL-2245enaXmlChange' into develop
2016-10-04 gmungocJAL-2245 Castor mapping and code changes for change... bug/JAL-2245enaXmlChange
2016-10-03 Jim ProcterJAL-2210 use addDBRef to ensure normalisation (just...
2016-10-03 Jim ProcterJAL-2210 need to add both transcript and product, and...
2016-10-03 Jim ProcterJAL-2210 JAL-2232 remove version number from ENACDS...
2016-10-02 Jim ProcterJAL-2210 remove ENSEMBL from protein DB list:
2016-10-01 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_unipro...
2016-09-29 gmungocJAL-2213 code warnings addressed (typed collections...
2016-09-28 Jim ProcterJAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot...
2016-09-07 Jim ProcterJAL-282 TODO - Sequence name from PDB had redundant...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe...
2016-07-26 tcofoegbuJAL-2157 bugfix for issues from enum refactoring
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-07-20 Jim ProcterJAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMA...
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF...
2016-07-12 gmungocFileFormat enum wip changes
2016-07-11 gmungocfile format enum wip changes
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing...
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser...
2016-06-20 gmungocJAL-1667 updated PDB example query to a valid id (witho...
2016-05-31 Jim ProcterMerge branch 'develop' into features/JAL-2113_emblXml1.2
2016-05-27 gmungocJAL-1911 correct typo in field name
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference...
2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove...
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL...
2016-04-26 Jim ProcterJAL-2079 fix broken cherry-pick conflict merge
2016-04-26 Jim ProcterJAL-2079 use new service to retrieve Rfam Seed alignment
2016-04-26 Jim ProcterJAL-2079 update URL for RFAM and PFAM sources
2016-04-26 Jim ProcterJAL-2079 allow prefix+<XFAMID>+suffix type URL signature
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free...
2016-03-24 tcofoegbuJAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting...
2016-03-22 tcofoegburesolve conflict with Mungo's merge
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher...
2016-03-21 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-03-21 tcofoegbudevelop merge features/JAL-1919_mmCIF-Support
2016-03-21 gmungocJAL-2029 many-to-many EnsemblCDS-to-Uniprot mappings
2016-03-21 tcofoegbuJAL-2028 added improvement for preconfigured ordering...
2016-03-21 tcofoegbudevelop merge
2016-03-16 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-03-16 tcofoegbuJAL-2028 improvment to the displayed column customisation
2016-03-15 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... mungo_develop
2016-03-11 tcofoegbuJAL-2026 Bug fix for best quality filter
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot
2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual...
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according...
2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage...
2016-02-12 gmungocJAL-1270 remove trailing space + test
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods...
2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-31 tcofoegbuJAL-1700 updated error handling with suggested improvem...
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-08-04 tcofoegbuJAL-1821 updated the reference sequence column of struc...
2015-07-23 tcofoegbuJAL-1805 modified test setup's so the are ran for group...
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-01 tcofoegbuhouse keeping
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac...
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring
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