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[jalview.git]
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src
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jalview
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ws
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2007-02-07
amwaterhouse
Formatting
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commitdiff
2007-01-25
amwaterhouse
Command takes alignment, not gapChar
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commitdiff
2007-01-18
amwaterhouse
File Parsing returns Alignments, not Sequence[]
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commitdiff
2006-12-21
amwaterhouse
remove unnecessary import
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commitdiff
2006-12-05
amwaterhouse
Sequence is char []
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commitdiff
2006-11-30
amwaterhouse
indexOf replaces contains
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commitdiff
2006-11-30
jprocter
fix bad grammar in new alignment title
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commitdiff
2006-11-08
amwaterhouse
Remove unnecessary imports
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commitdiff
2006-10-24
amwaterhouse
Uses RemoveGapsCommand
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commitdiff
2006-10-24
amwaterhouse
Remove variables not used
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commitdiff
2006-10-06
jprocter
Added filter so that input to a JPred job is *solely...
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commitdiff
2006-10-05
amwaterhouse
AlignFrame must take width and height
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commitdiff
2006-08-22
jprocter
hidden region recovery in JPred and new hidden region...
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commitdiff
2006-08-21
amwaterhouse
header updated
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commitdiff
2006-08-21
jprocter
Refactored Jnet and added hidden columns support.
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commitdiff
2006-08-21
jprocter
avoid null pointer exceptions
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commitdiff
2006-08-17
jprocter
moved visible sub-alignment extraction and update from...
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commitdiff
2006-08-15
jprocter
first stage of adapting JNet client to hidden regions...
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commitdiff
2006-08-15
jprocter
fixed alignment ordering name.
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commitdiff
2006-08-15
amwaterhouse
WRITEABLE_FORMATS and READABLE_FORMATS string []
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commitdiff
2006-08-14
jprocter
refactored to create generic polling thread and subjobs
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commitdiff
2006-08-14
jprocter
multiple subjobs can be cancelled and gui only allows...
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commitdiff
2006-08-14
jprocter
fixing residue clip bug in MsaWSThread and adding minim...
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commitdiff
2006-08-13
jprocter
fixed end-residue bug and subjob panel names bug
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commitdiff
2006-08-11
jprocter
multiple web service jobs from visible blocks of an...
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commitdiff
2006-08-04
jprocter
recover original data for tree and pca as alignment...
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commitdiff
2006-07-26
jprocter
Ignore list created
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commitdiff
2006-07-19
amwaterhouse
Merge new frame buttons added
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commitdiff
2006-05-17
jprocter
refactored code for creating JNet annotations
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commitdiff
2006-05-16
jprocter
added popup warning when proxy settings must be configured.
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commitdiff
2006-05-12
jprocter
rearranged discoverer to dynamically update on demand
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commitdiff
2006-05-10
amwaterhouse
Annotations must createSequenceMapping if seqRef not...
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commitdiff
2006-04-06
amwaterhouse
Must copy feature settings from one frame to another...
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commitdiff
2006-04-06
amwaterhouse
Must copy feature settings from one frame to another...
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commitdiff
2006-03-20
amwaterhouse
Correct reference
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commitdiff
2006-03-08
amwaterhouse
IdentifyFile should not be static
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commitdiff
2006-02-24
amwaterhouse
Add Annotation to specific sequence
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commitdiff
2005-12-22
amwaterhouse
Annotations.Graph can be bargraph, linegraph
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commitdiff
2005-12-08
jprocter
modified jnet parsing exception report string.
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commitdiff
2005-12-08
amwaterhouse
After merge
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commitdiff
2005-12-06
amwaterhouse
after merge
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commitdiff
2005-09-30
amwaterhouse
Remove redundancy in Eclipse
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commitdiff
2005-09-22
amwaterhouse
Create Instance of FormatAdapter
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commitdiff
2005-09-15
jprocter
Fixed so job submission and job failure errors are...
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commitdiff
2005-09-15
amwaterhouse
Logger moved to prefs so that class not found error...
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commitdiff
2005-09-14
amwaterhouse
Remove system out tests
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commitdiff
2005-09-14
amwaterhouse
System.gc after outofmemory
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commitdiff
2005-09-13
amwaterhouse
Warn if out of memory
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commitdiff
2005-09-05
jprocter
More informative error messages.
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commitdiff
2005-09-01
amwaterhouse
Add header to file
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commitdiff
2005-08-22
jprocter
tidied client and fixed non-unique msa bug (lead to...
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commitdiff
2005-08-22
jprocter
regenerated Jpred stubs and tidied client thread.
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commitdiff
2005-08-18
jprocter
error checking, sanitization and properties support.
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commitdiff
2005-08-18
jprocter
Jpred to JNet
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commitdiff
2005-08-17
jprocter
Client threads for discovered web services.
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commitdiff
2005-08-17
jprocter
Maintain list of webservices and query any Service...
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commitdiff
2005-06-30
amwaterhouse
Formatting changes
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commitdiff
2005-06-16
jprocter
better clustalw reference
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commitdiff
2005-06-10
jprocter
removed exception name from server error state (to...
tree
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commitdiff
2005-06-08
amwaterhouse
Formatted source
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commitdiff
2005-06-08
amwaterhouse
GPL license added
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commitdiff
2005-06-05
jprocter
more subtle rearrangements
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commitdiff
2005-06-02
jprocter
tidied the exceptions and ws server error behaviour
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commitdiff
2005-05-30
jprocter
Added clustalW 'realignment' (primitive)
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commitdiff
2005-05-30
jprocter
propagated use of jalview.util.GapChars for gap removal.
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commitdiff
2005-05-27
jprocter
fixed brain interruption bug.
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commitdiff
2005-05-27
jprocter
added proper state check for failedJob flag.
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commitdiff
2005-05-27
jprocter
Jpredfile now uses the PileUpfile io class.
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commitdiff
2005-05-26
jprocter
bug fix in jpred client. TreeViewer display state and...
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commitdiff
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
tree
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commitdiff
2005-05-25
jprocter
Improved consistency between JPredWS and MsaWS
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commitdiff
2005-05-25
jprocter
base class for web service clients.
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commitdiff
2005-05-24
jprocter
title parameter for single sequence prediction.
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commitdiff
2005-05-23
jprocter
fixed window title names for prediction on MSA or Sequence.
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commitdiff
2005-05-23
jprocter
Ugly but improved recovery of sequence names, starts...
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commitdiff
2005-05-22
jprocter
Added alignment ordering option to 'Sort by' and implem...
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commitdiff
2005-05-20
jprocter
Semiworking generic MSA client
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commitdiff
2005-05-05
jprocter
Added cancel interface for JPred Client and fixed some...
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commitdiff
2005-05-03
jprocter
Better treatment of error states and cancellability...
tree
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commitdiff
2005-05-03
amwaterhouse
FormatAdapter readFile
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commitdiff
2005-04-28
jprocter
First try with MuscleWS
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commitdiff
2005-04-13
jprocter
Added order-preservation for clustalW alignment. No...
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commitdiff
2005-03-31
jprocter
Added a flag to control if the "/<seq_start>-<seq_end...
tree
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commitdiff
2005-03-30
jprocter
cleaned up some comments and exception messages.
tree
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commitdiff
2005-02-28
jprocter
added uniquify sequence id assertion.
tree
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commitdiff
2005-02-23
jprocter
making Jemboss client more configurable.
tree
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commitdiff
2005-02-08
jprocter
formatting imports.
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commitdiff
2005-01-15
jprocter
first jemboss clustalw client for jalview.
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commitdiff