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sequence db fetcher and db reference validation/annotation transfer
[jalview.git] / src / jalview / ws /
2007-12-21 jproctersequence db fetcher and db reference validation/annotat... tree | commitdiff
2007-11-16 jproctertypo tree | commitdiff
2007-11-16 jprocterjavadoc tree | commitdiff
2007-11-16 jprocteradded generic method for adding new database proxies... tree | commitdiff
2007-11-16 jprocterrefactored ebi soap client and AbstractSequenceFetcher... tree | commitdiff
2007-11-16 jprocterrefactor abstract sequence fetching and DBSource machin... tree | commitdiff
2007-11-12 jprocteradded mechanism to initiate DAS feature fetching progra... tree | commitdiff
2007-10-31 jprocterfactored out reference to parent alignFrame (so all... tree | commitdiff
2007-10-29 jprocterbugfix for alignments without aligned codon frames tree | commitdiff
2007-10-24 jprocterindividual query error/exception report and bugfix tree | commitdiff
2007-09-29 jprocteralways update PDBEntry list if DBRefEntries might have... tree | commitdiff
2007-09-29 jprocteruse pdb refsource string tree | commitdiff
2007-09-10 jprocterensure dbrefs are added to dataset sequence. tree | commitdiff
2007-08-30 jprocterrefactored and ensured alCodonMappings are propagated... tree | commitdiff
2007-08-24 jprocterremove null pointer exception when embl file is not... tree | commitdiff
2007-08-08 jproctergeneralise name of prediction method tree | commitdiff
2007-07-13 jprocternew DBRef management and generalised source and entry... tree | commitdiff
2007-02-07 amwaterhouseFormatting tree | commitdiff
2007-01-25 amwaterhouseCommand takes alignment, not gapChar tree | commitdiff
2007-01-18 amwaterhouseFile Parsing returns Alignments, not Sequence[] tree | commitdiff
2006-12-21 amwaterhouseremove unnecessary import tree | commitdiff
2006-12-05 amwaterhouseSequence is char [] tree | commitdiff
2006-11-30 amwaterhouseindexOf replaces contains tree | commitdiff
2006-11-30 jprocterfix bad grammar in new alignment title tree | commitdiff
2006-11-08 amwaterhouseRemove unnecessary imports tree | commitdiff
2006-10-24 amwaterhouseUses RemoveGapsCommand tree | commitdiff
2006-10-24 amwaterhouseRemove variables not used tree | commitdiff
2006-10-06 jprocterAdded filter so that input to a JPred job is *solely... tree | commitdiff
2006-10-05 amwaterhouseAlignFrame must take width and height tree | commitdiff
2006-08-22 jprocterhidden region recovery in JPred and new hidden region... tree | commitdiff
2006-08-21 amwaterhouseheader updated tree | commitdiff
2006-08-21 jprocterRefactored Jnet and added hidden columns support. tree | commitdiff
2006-08-21 jprocteravoid null pointer exceptions tree | commitdiff
2006-08-17 jproctermoved visible sub-alignment extraction and update from... tree | commitdiff
2006-08-15 jprocterfirst stage of adapting JNet client to hidden regions... tree | commitdiff
2006-08-15 jprocterfixed alignment ordering name. tree | commitdiff
2006-08-15 amwaterhouseWRITEABLE_FORMATS and READABLE_FORMATS string [] tree | commitdiff
2006-08-14 jprocterrefactored to create generic polling thread and subjobs tree | commitdiff
2006-08-14 jproctermultiple subjobs can be cancelled and gui only allows... tree | commitdiff
2006-08-14 jprocterfixing residue clip bug in MsaWSThread and adding minim... tree | commitdiff
2006-08-13 jprocterfixed end-residue bug and subjob panel names bug tree | commitdiff
2006-08-11 jproctermultiple web service jobs from visible blocks of an... tree | commitdiff
2006-08-04 jprocterrecover original data for tree and pca as alignment... tree | commitdiff
2006-07-26 jprocterIgnore list created tree | commitdiff
2006-07-19 amwaterhouseMerge new frame buttons added tree | commitdiff
2006-05-17 jprocterrefactored code for creating JNet annotations tree | commitdiff
2006-05-16 jprocteradded popup warning when proxy settings must be configured. tree | commitdiff
2006-05-12 jprocterrearranged discoverer to dynamically update on demand tree | commitdiff
2006-05-10 amwaterhouseAnnotations must createSequenceMapping if seqRef not... tree | commitdiff
2006-04-06 amwaterhouseMust copy feature settings from one frame to another... tree | commitdiff
2006-04-06 amwaterhouseMust copy feature settings from one frame to another... tree | commitdiff
2006-03-20 amwaterhouseCorrect reference tree | commitdiff
2006-03-08 amwaterhouseIdentifyFile should not be static tree | commitdiff
2006-02-24 amwaterhouseAdd Annotation to specific sequence tree | commitdiff
2005-12-22 amwaterhouseAnnotations.Graph can be bargraph, linegraph tree | commitdiff
2005-12-08 jproctermodified jnet parsing exception report string. tree | commitdiff
2005-12-08 amwaterhouseAfter merge tree | commitdiff
2005-12-06 amwaterhouseafter merge tree | commitdiff
2005-09-30 amwaterhouseRemove redundancy in Eclipse tree | commitdiff
2005-09-22 amwaterhouseCreate Instance of FormatAdapter tree | commitdiff
2005-09-15 jprocterFixed so job submission and job failure errors are... tree | commitdiff
2005-09-15 amwaterhouseLogger moved to prefs so that class not found error... tree | commitdiff
2005-09-14 amwaterhouseRemove system out tests tree | commitdiff
2005-09-14 amwaterhouseSystem.gc after outofmemory tree | commitdiff
2005-09-13 amwaterhouseWarn if out of memory tree | commitdiff
2005-09-05 jprocterMore informative error messages. tree | commitdiff
2005-09-01 amwaterhouseAdd header to file tree | commitdiff
2005-08-22 jproctertidied client and fixed non-unique msa bug (lead to... tree | commitdiff
2005-08-22 jprocterregenerated Jpred stubs and tidied client thread. tree | commitdiff
2005-08-18 jproctererror checking, sanitization and properties support. tree | commitdiff
2005-08-18 jprocterJpred to JNet tree | commitdiff
2005-08-17 jprocterClient threads for discovered web services. tree | commitdiff
2005-08-17 jprocterMaintain list of webservices and query any Service... tree | commitdiff
2005-06-30 amwaterhouseFormatting changes tree | commitdiff
2005-06-16 jprocterbetter clustalw reference tree | commitdiff
2005-06-10 jprocterremoved exception name from server error state (to... tree | commitdiff
2005-06-08 amwaterhouseFormatted source tree | commitdiff
2005-06-08 amwaterhouseGPL license added tree | commitdiff
2005-06-05 jproctermore subtle rearrangements tree | commitdiff
2005-06-02 jproctertidied the exceptions and ws server error behaviour tree | commitdiff
2005-05-30 jprocterAdded clustalW 'realignment' (primitive) tree | commitdiff
2005-05-30 jprocterpropagated use of jalview.util.GapChars for gap removal. tree | commitdiff
2005-05-27 jprocterfixed brain interruption bug. tree | commitdiff
2005-05-27 jprocteradded proper state check for failedJob flag. tree | commitdiff
2005-05-27 jprocterJpredfile now uses the PileUpfile io class. tree | commitdiff
2005-05-26 jprocterbug fix in jpred client. TreeViewer display state and... tree | commitdiff
2005-05-25 jproctertidied up system.out messages and moved many to stderr. tree | commitdiff
2005-05-25 jprocterImproved consistency between JPredWS and MsaWS tree | commitdiff
2005-05-25 jprocterbase class for web service clients. tree | commitdiff
2005-05-24 jproctertitle parameter for single sequence prediction. tree | commitdiff
2005-05-23 jprocterfixed window title names for prediction on MSA or Sequence. tree | commitdiff
2005-05-23 jprocterUgly but improved recovery of sequence names, starts... tree | commitdiff
2005-05-22 jprocterAdded alignment ordering option to 'Sort by' and implem... tree | commitdiff
2005-05-20 jprocterSemiworking generic MSA client tree | commitdiff
2005-05-05 jprocterAdded cancel interface for JPred Client and fixed some... tree | commitdiff
2005-05-03 jprocterBetter treatment of error states and cancellability... tree | commitdiff
2005-05-03 amwaterhouseFormatAdapter readFile tree | commitdiff
2005-04-28 jprocterFirst try with MuscleWS tree | commitdiff
2005-04-13 jprocterAdded order-preservation for clustalW alignment. No... tree | commitdiff
2005-03-31 jprocterAdded a flag to control if the "/<seq_start>-<seq_end... tree | commitdiff
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