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[jalview.git] / src / jalview / ws /
2007-02-07 amwaterhouseFormatting
2007-01-25 amwaterhouseCommand takes alignment, not gapChar
2007-01-18 amwaterhouseFile Parsing returns Alignments, not Sequence[]
2006-12-21 amwaterhouseremove unnecessary import
2006-12-05 amwaterhouseSequence is char []
2006-11-30 amwaterhouseindexOf replaces contains
2006-11-30 jprocterfix bad grammar in new alignment title
2006-11-08 amwaterhouseRemove unnecessary imports
2006-10-24 amwaterhouseUses RemoveGapsCommand
2006-10-24 amwaterhouseRemove variables not used
2006-10-06 jprocterAdded filter so that input to a JPred job is *solely...
2006-10-05 amwaterhouseAlignFrame must take width and height
2006-08-22 jprocterhidden region recovery in JPred and new hidden region...
2006-08-21 amwaterhouseheader updated
2006-08-21 jprocterRefactored Jnet and added hidden columns support.
2006-08-21 jprocteravoid null pointer exceptions
2006-08-17 jproctermoved visible sub-alignment extraction and update from...
2006-08-15 jprocterfirst stage of adapting JNet client to hidden regions...
2006-08-15 jprocterfixed alignment ordering name.
2006-08-15 amwaterhouseWRITEABLE_FORMATS and READABLE_FORMATS string []
2006-08-14 jprocterrefactored to create generic polling thread and subjobs
2006-08-14 jproctermultiple subjobs can be cancelled and gui only allows...
2006-08-14 jprocterfixing residue clip bug in MsaWSThread and adding minim...
2006-08-13 jprocterfixed end-residue bug and subjob panel names bug
2006-08-11 jproctermultiple web service jobs from visible blocks of an...
2006-08-04 jprocterrecover original data for tree and pca as alignment...
2006-07-26 jprocterIgnore list created
2006-07-19 amwaterhouseMerge new frame buttons added
2006-05-17 jprocterrefactored code for creating JNet annotations
2006-05-16 jprocteradded popup warning when proxy settings must be configured.
2006-05-12 jprocterrearranged discoverer to dynamically update on demand
2006-05-10 amwaterhouseAnnotations must createSequenceMapping if seqRef not...
2006-04-06 amwaterhouseMust copy feature settings from one frame to another...
2006-04-06 amwaterhouseMust copy feature settings from one frame to another...
2006-03-20 amwaterhouseCorrect reference
2006-03-08 amwaterhouseIdentifyFile should not be static
2006-02-24 amwaterhouseAdd Annotation to specific sequence
2005-12-22 amwaterhouseAnnotations.Graph can be bargraph, linegraph
2005-12-08 jproctermodified jnet parsing exception report string.
2005-12-08 amwaterhouseAfter merge
2005-12-06 amwaterhouseafter merge
2005-09-30 amwaterhouseRemove redundancy in Eclipse
2005-09-22 amwaterhouseCreate Instance of FormatAdapter
2005-09-15 jprocterFixed so job submission and job failure errors are...
2005-09-15 amwaterhouseLogger moved to prefs so that class not found error...
2005-09-14 amwaterhouseRemove system out tests
2005-09-14 amwaterhouseSystem.gc after outofmemory
2005-09-13 amwaterhouseWarn if out of memory
2005-09-05 jprocterMore informative error messages.
2005-09-01 amwaterhouseAdd header to file
2005-08-22 jproctertidied client and fixed non-unique msa bug (lead to...
2005-08-22 jprocterregenerated Jpred stubs and tidied client thread.
2005-08-18 jproctererror checking, sanitization and properties support.
2005-08-18 jprocterJpred to JNet
2005-08-17 jprocterClient threads for discovered web services.
2005-08-17 jprocterMaintain list of webservices and query any Service...
2005-06-30 amwaterhouseFormatting changes
2005-06-16 jprocterbetter clustalw reference
2005-06-10 jprocterremoved exception name from server error state (to...
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-06-05 jproctermore subtle rearrangements
2005-06-02 jproctertidied the exceptions and ws server error behaviour
2005-05-30 jprocterAdded clustalW 'realignment' (primitive)
2005-05-30 jprocterpropagated use of jalview.util.GapChars for gap removal.
2005-05-27 jprocterfixed brain interruption bug.
2005-05-27 jprocteradded proper state check for failedJob flag.
2005-05-27 jprocterJpredfile now uses the PileUpfile io class.
2005-05-26 jprocterbug fix in jpred client. TreeViewer display state and...
2005-05-25 jproctertidied up system.out messages and moved many to stderr.
2005-05-25 jprocterImproved consistency between JPredWS and MsaWS
2005-05-25 jprocterbase class for web service clients.
2005-05-24 jproctertitle parameter for single sequence prediction.
2005-05-23 jprocterfixed window title names for prediction on MSA or Sequence.
2005-05-23 jprocterUgly but improved recovery of sequence names, starts...
2005-05-22 jprocterAdded alignment ordering option to 'Sort by' and implem...
2005-05-20 jprocterSemiworking generic MSA client
2005-05-05 jprocterAdded cancel interface for JPred Client and fixed some...
2005-05-03 jprocterBetter treatment of error states and cancellability...
2005-05-03 amwaterhouseFormatAdapter readFile
2005-04-28 jprocterFirst try with MuscleWS
2005-04-13 jprocterAdded order-preservation for clustalW alignment. No...
2005-03-31 jprocterAdded a flag to control if the "/<seq_start>-<seq_end...
2005-03-30 jproctercleaned up some comments and exception messages.
2005-02-28 jprocteradded uniquify sequence id assertion.
2005-02-23 jproctermaking Jemboss client more configurable.
2005-02-08 jprocterformatting imports.
2005-01-15 jprocterfirst jemboss clustalw client for jalview.