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JAL-4054 Altered file association templates and generated install4j xml and Info...
[jalview.git]
/
test
/
jalview
/
datamodel
/
AlignmentTest.java
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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diff to current
2019-03-04
gmungoc
Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...
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diff to current
2019-01-29
hansonr
test package fix for List<DBRefEntry> DBrefs (untested)
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diff to current
2018-11-28
gmungoc
JAL-3164 redraw complement overview on hide columns
bug/JAL-3164complementOverview
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diff to current
2018-09-10
gmungoc
JAL-3099 use Alignment.getVisibleWidth() where wanted
bug/JAL-3099alignmentVisibleWidth
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2018-03-15
gmungoc
JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
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diff to current
2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
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diff to current
2018-02-05
Jim Procter
JAL-2780 JAL-2781 test AlignmentI.findAnnotations locat...
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diff to current
2018-02-05
Jim Procter
JAL-2780 JAL-2781 - patch and first test for AlignmentI...
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diff to current
2018-01-29
gmungoc
JAL-1270 testPadGaps() added
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diff to current
2018-01-19
kiramt
JAL-2759 Moved propagateInsertions out of HiddenColumns
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diff to current
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
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2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
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2017-06-14
gmungoc
JAL-2598 Sequence.getSequence return a copy of the...
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-06-07
kiramt
JAL-2591 More refactoring (incomplete)
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diff to current
2017-05-15
Jim Procter
JAL-2507 fix test: knockon from capitalisation on secon...
bug/JAL-2507_rnasecstrstockholm
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diff to current
2017-04-27
Jim Procter
JAL-2494 test to cover AnnotatedCollectionI.findAnnotat...
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diff to current
2017-03-31
gmungoc
JAL-2405 additional checks for circular reference in...
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diff to current
2017-03-17
kiramt
JAL-2437 Synchronization corrections and unit tests
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diff to current
2017-01-06
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
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2017-01-05
gmungoc
JAL-2374 unit test for (modified) Alignment.findGroup()
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diff to current
2016-12-21
gmungoc
JAL-2360 Javadoc and test cases for findAnnotation
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2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
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diff to current
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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diff to current
2016-11-24
tcofoegbu
JAL-2326 added setup method for JvOptionPane in all...
features/JAL-2326_JOptionPane-refactoring
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
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diff to current
2016-10-05
Jim Procter
JAL-2189 format tests
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commitdiff
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diff to current
2016-10-04
gmungoc
JAL-2232 added test that failed before last fix, passes...
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diff to current
2016-08-30
Jim Procter
JAL-2154 javadoc, fix underloaded version of assertData...
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diff to current
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
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diff to current
2016-08-29
Jim Procter
JAL-2154 Optional message parameter for assertDatasetNo...
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diff to current
2016-08-29
Jim Procter
JAL-2154 new assertDatasetIsNormalised to trivially...
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diff to current
2016-08-29
Jim Procter
JAL-2154 additional test that removing a duplicate...
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diff to current
2016-08-22
Jim Procter
JAL-2154 always check dataset sequence for sequence...
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diff to current
2016-08-22
Jim Procter
JAL-2154 patch verifyAlignment so it fails for duplicat...
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commitdiff
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diff to current
2016-08-22
Jim Procter
JAL-2154 tidy assert messages and fix test to verify...
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diff to current
2016-08-22
Jim Procter
JAL-2154 test that verifyAlignment fails for duplicate...
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2016-08-19
Jim Procter
JAL-2154 testNG like assertAlignmentDatasetRefs static...
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diff to current
2016-08-16
Jim Procter
JAL-2154 verify sequenceI/dataset refs for codonmappings
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diff to current
2016-08-16
Jim Procter
JAL-2154 check alignment isn’t null before validating
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diff to current
2016-08-16
Jim Procter
JAL-2154 new assert to check reference integrity for...
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diff to current
2016-08-04
Jim Procter
JAL-2154 make sure all sequences referenced via DBRefEn...
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diff to current
2016-07-18
Jim Procter
JAL-2110 JAL-2145 fix out of date test for 2baee069f9ed...
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2016-07-11
gmungoc
file format enum wip changes
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2016-07-06
gmungoc
JAL-2110 AlignmentUtils.alignCdsAsProtein implemented
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diff to current
2016-06-20
Jim Procter
JAL-2110 copy alcodonframes only if copy constructor...
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diff to current
2016-06-19
Jim Procter
JAL-2110 JAL-2131 JAL-1765 remove reference to jalview...
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2016-04-11
tcofoegbu
JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl...
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diff to current
2016-04-01
gmungoc
JAL-1705 reworked AlignmentUtils.makeCdsAlignment and...
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2016-01-05
gmungoc
JAL-653 updating 'align as' tests to match latest tweak...
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2015-12-22
gmungoc
JAL-653 realise virtual mappings and align when adding...
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diff to current
2015-12-03
gmungoc
JAL-653 mappings always reside on the dataset alignment...
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2015-11-30
gmungoc
JAL-1270 constructor test added
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
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diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
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diff to current
2015-09-22
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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commitdiff
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diff to current
2015-09-14
gmungoc
JAL-1880 handle sequence offsets properly when mapping...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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diff to current
2015-09-10
Jim Procter
JAL-1645 licencing for new files in test and utils
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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diff to current
2015-07-23
tcofoegbu
JAL-1805 modified test setup's so the are ran for group...
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commitdiff
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diff to current
2015-07-08
gmungoc
JAL-1759 merge from develop
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commitdiff
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diff to current
2015-07-07
tcofoegbu
JAL-1805 test envirionment separation
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commitdiff
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diff to current
2015-06-23
Jim Procter
JAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac...
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diff to current
2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
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diff to current
2015-06-19
tcofoegbu
JAL-1270 test suits import order refactor
features/JAL-1270_JUnit-to-TestNG
features/JAL-1782_JUnit-to-TestNG
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diff to current
2015-06-19
tcofoegbu
JAL-1270 JUnit to TestNG refactoring
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diff to current
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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diff to current
2014-10-13
gmungoc
JAL-1264 unneeded setup removed
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commitdiff
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diff to current
2014-10-13
gmungoc
JAL-1264 unit test corrected
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commitdiff
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diff to current
2014-10-10
gmungoc
JAL-1264 unit tests
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diff to current