2022-12-14 |
Jim Procter | Merge branch 'develop' into update_212_Dec_merge_with_2... |
tree | commitdiff |
2022-11-21 |
Jim Procter | Merge commit 'alpha/update_2_12_for_2_11_2_series_merge... |
tree | commitdiff |
2022-03-08 |
Jim Procter | JAL-3746 apply copyright to tests spike/try_spotless_JAL-3438 |
tree | commitdiff |
2022-03-08 |
Jim Procter | JAL-3438 spotless for 2.11.2.0 |
tree | commitdiff |
2022-02-14 |
Jim Procter | JAL-3956 - PDBEntry objects constructed from 3D-Beacons... |
tree | commitdiff |
2022-01-28 |
Jim Procter | Merge branch 'merge/develop_JAL-3725' into develop |
tree | commitdiff |
2022-01-26 |
Jim Procter | Merge branch 'task/JAL-3763_newDatasetForCds' into... |
tree | commitdiff |
2022-01-26 |
gmungoc | JAL-3725 restrict mapped virtual feature location to... |
tree | commitdiff |
2021-10-01 |
gmungoc | JAL-3725 restrict mapped virtual feature location to... |
tree | commitdiff |
2021-09-21 |
Ben Soares | JAL-3691 automatic insertion of Locale.ROOT to toUpperC... |
tree | commitdiff |
2021-09-21 |
Jim Procter | JAL-3829 ignore the fake ID generated when a PDB format... |
tree | commitdiff |
2021-09-20 |
Jim Procter | JAL-3829 allow PDBEntry with file and ID with mismatchi... |
tree | commitdiff |
2021-09-17 |
Jim Procter | JAL-2226 new method to search for annotation matching... |
tree | commitdiff |
2021-09-16 |
Jim Procter | JAL-3794 new test for recognition of protein or DNA... |
tree | commitdiff |
2021-09-03 |
Jim Procter | JAL-3863 promote non-canonical version of dbref to... |
tree | commitdiff |
2021-09-03 |
Jim Procter | JAL-3863 passing test to verify a uniprot accession... |
tree | commitdiff |
2021-06-09 |
Jim Procter | JAL-3840 failing test - show that addGaps overflows |
tree | commitdiff |
2021-06-09 |
Jim Procter | JAL-3840 failing test - show that addGaps overflows |
tree | commitdiff |
2020-12-14 |
Jim Procter | Merge branch 'Jalview-JS/develop' into merge_js_develop |
tree | commitdiff |
2020-10-28 |
gmungoc | JAL-3725 restrict mapped virtual feature location to... |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3763 Javadoc, check for null, additional tests |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3763 test coverage for AlignedCodonFrame.markMapped... |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3700 additions and corrections to unit tests |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3763 Javadoc, check for null, additional tests task/JAL-3763_newDatasetForCds |
tree | commitdiff |
2020-10-22 |
gmungoc | JAL-3763 test coverage for AlignedCodonFrame.markMapped... |
tree | commitdiff |
2020-09-22 |
Jim Procter | JAL-3748 simple test for SeqCigar preservation of start... |
tree | commitdiff |
2020-09-22 |
Jim Procter | JAL-3748 additional asserts to verify start/end after... |
tree | commitdiff |
2020-09-17 |
gmungoc | JAL-3700 additions and corrections to unit tests bug/JAL-3700_mapSequenceSelection |
tree | commitdiff |
2020-08-17 |
Jim Procter | JAL-3490 merged with 2.11.2 develop |
tree | commitdiff |
2020-08-17 |
Jim Procter | Merge branch 'patch/Release_2_11_1_Branch_patch_JAL... |
tree | commitdiff |
2020-08-10 |
gmungoc | JAL-3490 match count independent of contiguous matches... patch/Release_2_11_1_Branch_patch_JAL-3490 |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3621 corrected sequence feature sort and test |
tree | commitdiff |
2020-06-30 |
gmungoc | JAL-3446 unused imports removed |
tree | commitdiff |
2020-06-04 |
gmungoc | JAL-3446 post-merge unit test fixes, formatting |
tree | commitdiff |
2020-05-19 |
gmungoc | JAL-3621 corrected sequence feature sort and test |
tree | commitdiff |
2020-05-19 |
gmungoc | JAL-3621 corrected sequence feature sort and test |
tree | commitdiff |
2020-05-18 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
tree | commitdiff |
2020-05-18 |
gmungoc | Merge branch 'Jalview-JS/develop' into develop |
tree | commitdiff |
2020-05-01 |
gmungoc | JAL-3613 check sequence overlap when matching search... |
tree | commitdiff |
2020-04-23 |
Jim Procter | Merge branch 'develop' into alpha/JAL-3362_Jalview_212_... |
tree | commitdiff |
2020-04-21 |
Jim Procter | Merge branch 'bug/JAL-3574filterByPOS' into documentati... |
tree | commitdiff |
2020-04-21 |
Jim Procter | JAL-3567 translated rather than imputed peptide |
tree | commitdiff |
2020-04-17 |
gmungoc | JAL-3567 unit tests for linked feature tooltips |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 adjust layout of linked feature report, unit... |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 report mapped location for virtual features... |
tree | commitdiff |
2020-04-13 |
gmungoc | JAL-3574 Matcher with integer/long value pattern (e... |
tree | commitdiff |
2020-03-30 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2020-02-27 |
Jim Procter | Merge branch 'bug/JAL-3296changeStartInvalidateCursor... |
tree | commitdiff |
2019-10-08 |
gmungoc | Merge branch 'develop' into Jalview-JS/develop |
tree | commitdiff |
2019-09-26 |
Jim Procter | JAL-3070 allow SequenceI.findPositions(0,column+1)... |
tree | commitdiff |
2019-09-26 |
Jim Procter | JAL-3070 JAL-3066 AlignmentI.findOrAddAnnotation(Alignm... |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3187 case-insensitive codon variant calculation |
tree | commitdiff |
2019-08-13 |
Jim Procter | Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into... |
tree | commitdiff |
2019-07-16 |
gmungoc | JAL-3210 Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-07-08 |
gmungoc | JAL-3187 derived peptide variants tweaks and tests |
tree | commitdiff |
2019-06-17 |
gmungoc | JAL-2792 JAL-3187 linked features (if shown) in Feature... |
tree | commitdiff |
2019-06-17 |
gmungoc | JAL-3187 add sequence to feature details table (and... |
tree | commitdiff |
2019-06-10 |
gmungoc | JAL-3296 ensure sequence cursor reset when sequence... bug/JAL-3296changeStartInvalidateCursor |
tree | commitdiff |
2019-06-07 |
tva | JAL-3291 issue fixed, passing tests added |
tree | commitdiff |
2019-06-07 |
tva | JAL-3285 fix errors in tests introduced by merge |
tree | commitdiff |
2019-06-06 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-06-04 |
Jim Procter | Merge branch 'develop' into developtomchmmer |
tree | commitdiff |
2019-03-20 |
Ben Soares | JAL-3130 Lots of deprecation fixes. See utils/deprecat... |
tree | commitdiff |
2019-03-13 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2019-03-12 |
gmungoc | JAL-1270 missing 'alwaysRun=true' added to setup/teardown |
tree | commitdiff |
2019-03-05 |
gmungoc | Merge remote-tracking branch 'origin/bug/JAL-2839findWi... |
tree | commitdiff |
2019-03-04 |
gmungoc | Merge remote-tracking branch 'origin/bug/JAL-3082select... |
tree | commitdiff |
2019-03-04 |
gmungoc | Merge branch 'bug/JAL-3099alignmentVisibleWidth' into... |
tree | commitdiff |
2019-03-01 |
gmungoc | Merge branch 'bug/JAL-3164complementOverview' into... |
tree | commitdiff |
2019-03-01 |
gmungoc | Merge branch 'feature/intervalStoreJ' into merge/JAL... |
tree | commitdiff |
2019-03-01 |
gmungoc | JAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ |
tree | commitdiff |
2019-02-24 |
gmungoc | JAL-3198 SequenceGroup 'bulk constructor' without dupli... |
tree | commitdiff |
2019-02-04 |
hansonr | Test suite try/catch reverted |
tree | commitdiff |
2019-01-29 |
hansonr | test package fix for List<DBRefEntry> DBrefs (untested) |
tree | commitdiff |
2019-01-21 |
gmungoc | JAL-3187 unit tests updated and errors caught |
tree | commitdiff |
2019-01-17 |
gmungoc | Merge branch 'develop' into Jalview-BH/JAL-3026-JAL... |
tree | commitdiff |
2019-01-16 |
Jim Procter | Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... |
tree | commitdiff |
2018-12-17 |
Jim Procter | Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures |
tree | commitdiff |
2018-12-06 |
Ben Soares | JAL-3130 incorporating feature/JAL-3063jaxbNoCastor... |
tree | commitdiff |
2018-11-29 |
gmungoc | JAL-3140 NCList now via IntervalStore library |
tree | commitdiff |
2018-11-28 |
gmungoc | JAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview |
tree | commitdiff |
2018-10-17 |
Jim Procter | Merge branch 'feature/JAL-3063JAXB' into Jalview-BH... |
tree | commitdiff |
2018-09-17 |
gmungoc | JAL-3116 unit tests adapted to EMBL over JAXB |
tree | commitdiff |
2018-09-10 |
gmungoc | JAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth |
tree | commitdiff |
2018-08-16 |
gmungoc | JAL-3082 one more test condition bug/JAL-3082selectRegex |
tree | commitdiff |
2018-08-16 |
gmungoc | JAL-3082 handle regex error, exclusive threshold, unit... |
tree | commitdiff |
2018-08-10 |
gmungoc | JAL-3076 refactor for more efficient scan of 'gene... |
tree | commitdiff |
2018-06-05 |
gmungoc | Merge branch 'develop' into features/mchmmer |
tree | commitdiff |
2018-06-04 |
gmungoc | JAL-2808 update test for revised treatment of 'mixed... |
tree | commitdiff |
2018-05-11 |
gmungoc | Merge branch 'develop' into features/mchmmer |
tree | commitdiff |
2018-05-11 |
gmungoc | JAL-2986 additional asserts for SequenceCursor updates |
tree | commitdiff |
2018-05-11 |
gmungoc | JAL-2986 failing test added |
tree | commitdiff |
2018-05-08 |
gmungoc | Merge branch 'develop' into features/mchmmer |
tree | commitdiff |
2018-05-07 |
gmungoc | JAL-2808 ensure test setUp/tearDown alwaysRun |
tree | commitdiff |
2018-03-30 |
gmungoc | JAL-2599 MapList from HMM nodes to consensus dataset... |
tree | commitdiff |
2018-03-26 |
gmungoc | JAL-2939 pull up set/IsNormalise[HMM]SequenceLogo |
tree | commitdiff |
2018-03-20 |
gmungoc | Merge branch 'develop' into features/mchmmer |
tree | commitdiff |
2018-03-16 |
gmungoc | Merge remote-tracking branch 'origin/releases/Release_2... |
tree | commitdiff |
2018-03-16 |
gmungoc | Merge branch 'develop' into trialMerge |
tree | commitdiff |
2018-03-15 |
gmungoc | JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES |
tree | commitdiff |
next |