JAL-2629 fix expected length error for hmmbuild by uniquifying sequences
[jalview.git] / test / jalview / ext /
2017-05-31 tcofoegbuFixed failing tests
2017-05-31 tcofoegbuJAL-2533 updated unit test to reflect improvement
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL...
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(...
2017-05-01 tcofoegbuJAL-2465 unit test for bugfix
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column...
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on...
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes...
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory
2017-01-23 gmungocJAL-2379 made SparseMatrix.divide() so as to exactly...
2017-01-17 gmungocJAL-2379 SparseDoubleArray added (for use by SparseMatrix)
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-11-29 gmungocMerge branch 'develop' into features/JAL-2295setChimera...
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-28 tcofoegbuMerge branch 'features/JAL-2326_JOptionPane-refactoring...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring
2016-11-24 Jim ProcterJAL-2325 apply license to new source files
2016-11-16 gmungocJAL-2296 unit test for reading Chimera attributes to...
2016-11-16 gmungocJAL-2295 don't exclude RESNUM from transfer to Chimera
2016-11-14 gmungocJAL-2295 JAL-2296 skeleton 'attributes to features...
2016-11-11 gmungocJAL-2295 tests now 'network-free' with local PDB and...
2016-11-11 gmungocJAL-1270 corrected command-line args
2016-11-11 gmungocJAL-2295 test that verifies transfer of features to...
2016-11-11 gmungocJAL-2295 sorted properties for readability
2016-11-10 gmungocJAL-2295 additional tests, stronger sanitisation of...
2016-11-08 gmungocJAL-2295 feature and colour commands refactored to...
2016-11-08 gmungocJAL-2295 extracted AtomSpecModel for reuse in Chimera...
2016-11-07 gmungocJAL-1805 groups=Functional added where missing
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-24 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-19 Jim ProcterJAL-2269 JAL-2195 review and revised test
2016-10-10 tcofoegbuJAL-2262 JAL-2195 unit test for bug bug/JAL-2262_dnd-for-local-structure-files
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 format tests
2016-10-03 gmungocJAL-98 throw exception (unhandled) for int overthrow...
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2016-09-19 tcofoegbumerge
2016-09-16 gmungocJAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
2016-09-16 gmungocJAL-2164 removed unused parameters from JmolParser...
2016-09-16 gmungocJAL-1270 JAL-1919 ensure Temp Factor is OFF for test...
2016-09-13 tcofoegbuRevert "JAL-2164 JAL-1919 disabled and removed PDB...
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled and removed PDB file parser...
2016-09-06 gmungocJAL-2106 DBRefEntry.isPrimary() renamed isPrimaryCandid...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-25 Jim ProcterJAL-2106 JAL-2154 cross-refs from Ensembl should verify...
2016-07-27 tcofoegbuJAL-1919 added codes for End-2-End scan for sequence...
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati...
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF...
2016-07-18 gmungocfileFormat enum wip changes
2016-07-11 gmungocfile format enum wip changes
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing...
2016-06-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-06-21 Jim ProcterJAL-1270 ensure before/after clauses have at least...
2016-06-21 gmungocJAL-1270 added runAlways=true to setUp method
2016-06-10 Jim ProcterJAL-1941 remove improper test tag from Annotate3D test...
2016-06-10 Jim ProcterJAL-1941 Annotate3d tests should be in network group
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi...
2016-05-02 Jim ProcterJAL-1270 capitalise test groups
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g....
2016-04-13 tcofoegbuJAL-1270 more fix for failing Functional test
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms)
2016-03-23 gmungocJAL-1705 add DBRefEntry for 'self' to retrieved transcr...
2016-03-22 gmungocJAL-1191 isolated SequenceOntology (BioJava wrapper...
2016-03-21 tcofoegbudevelop merge
2016-03-15 gmungocJAL-2016 corrected Javadoc, added test for anonymous...
2016-03-15 gmungocJAL-1705 compute reverse complement of variants on...
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot
2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processi...
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support...
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API....
2016-02-19 gmungocJAL-1705 regular expression updates, tests, other refac...
2016-02-19 gmungocJAL-1705 return Ensembl genes for model species for...
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl...
2016-02-04 gmungocJAL-1705 additional tests, validation regexp tweaks...
2016-02-01 gmungocJAL-1705 further unit tests
2016-02-01 gmungocJAL-1705 tests added
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard...
2016-01-28 gmungocJAL-1705 tests added, minor bugfix and refactoring
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-27 gmungocJAL-1705 use GET for single queries; set gene name...
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring
2016-01-21 gmungocJAL-1705 reworked Ensembl clients now fetching and...
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF...
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods...
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_...
2015-12-03 gmungocJAL-1827 code and comment tidy up
2015-12-02 gmungocJAL-1827 refactored to handle missing residues better
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils
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