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file format enum wip changes
[jalview.git] / test / jalview / io /
2016-07-11 gmungocfile format enum wip changes tree | commitdiff
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing... tree | commitdiff
2016-06-29 tcofoegbuJAL-1479 added test case to elaborate getEntityByMostOp... tree | commitdiff
2016-06-29 gmungocJAL-1369 fix bug reloading a project with group sequenc... tree | commitdiff
2016-06-28 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-28 tcofoegbuJAL-1479 improved SiftsClient test coverage and impleme... tree | commitdiff
2016-06-27 gmungocJAL-1369 additional asserts in testStoreAndRecoverRefer... tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-21 Jim ProcterJAL-1270 ensure before/after clauses have at least... tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 make sure desktop is cleared before test starts tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 jalview2xml tests need to be run sequentially tree | commitdiff
2016-06-21 Jim ProcterJAL-1369 fix the test tree | commitdiff
2016-06-20 Jim ProcterJAL-1369 failing test tree | commitdiff
2016-05-30 gmungocJAL-1670 JAL-2018 updated unit test for added example... tree | commitdiff
2016-05-26 gmungocJAL-2079 update examples to new pfam.xfam.org domain tree | commitdiff
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-05-09 gmungocJAL-2098 identify feature file with "<" in feature... tree | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly tree | commitdiff
2016-04-14 gmungocJAL-2041 clinical_significance shown on sequence featur... tree | commitdiff
2016-04-14 gmungocJAL-653 test updated for 'use ID for description' tree | commitdiff
2016-04-01 gmungocJAL-653 updated test to match parsing of multi-valued... tree | commitdiff
2016-03-22 gmungocJAL-1191 isolated SequenceOntology (BioJava wrapper... tree | commitdiff
2016-03-21 tcofoegbudevelop merge tree | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles tree | commitdiff
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl... tree | commitdiff
2016-02-12 gmungocJAL-1191 additions to SOLite, tweak to test tree | commitdiff
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard... tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... tree | commitdiff
2016-01-05 gmungocJAL-1191 check for obsolete term when descriptions... tree | commitdiff
2015-12-23 gmungocJAL-1191 zipped SO OBO file added to /resources, more... tree | commitdiff
2015-12-22 gmungocJAL-1191 more test cases tree | commitdiff
2015-12-22 gmungocJAL-1191 SequenceOntology wrapping/caching SO.OBO via... tree | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes tree | commitdiff
2015-12-03 gmungocJAL-653 code tidy / tests for 'realise gff mappings' tree | commitdiff
2015-11-30 gmungocJAL-653 test for 'resolving GFF mappings to sequences... tree | commitdiff
2015-11-30 gmungocJAL-652 further refactoring / tests tree | commitdiff
2015-11-30 gmungocJAL-652 correct case for test file name tree | commitdiff
2015-11-23 gmungocJAL-653 Gff tests moved back in to FeaturesFileTest tree | commitdiff
2015-11-22 gmungocJAL-653 test for 'groups file' and mixed Jalview/GFF tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-11-11 tcofoegbumerge tree | commitdiff
2015-10-30 Jim ProcterJAL-1954 formatting tree | commitdiff
2015-10-28 Jim ProcterJAL-1954 test PFAM import results in AlignmentI.hasVali... tree | commitdiff
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for... tree | commitdiff
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more... tree | commitdiff
2015-10-15 Jim ProcterJAL-653 JAL-1766 merge 290b1 - fix erroneous conflicts... tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 formatting tree | commitdiff
2015-10-01 tcofoegbuJAL-1912 refactor annotation refsequence assignemnt... tree | commitdiff
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc... tree | commitdiff
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment... tree | commitdiff
2015-09-24 tcofoegbuJAL-1896 bugfix to enabled Jalview restore clustal... tree | commitdiff
2015-09-16 gmungocJAL-1885 small fix to isVersionStringLaterThan plus... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html... tree | commitdiff
2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-09-02 Jim ProcterJAL-1772 non-functional test added. not doing any more... tree | commitdiff
2015-09-02 gmungocJAL-1673 new test to verify transferRESNUMFeatures() tree | commitdiff
2015-09-01 Jim ProcterJAL-1853 test demonstrating bug tree | commitdiff
2015-08-26 gmungocJAL-1759 updated unit test for removal of trim of Atom... tree | commitdiff
2015-08-14 tcofoegbuJAL-1831 added changes to allow auto-generation of... tree | commitdiff
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... tree | commitdiff
2015-08-04 tcofoegbuJAL-1816 fixed bug in identify file preventing it from... tree | commitdiff
2015-07-23 tcofoegbuJAL-1805 modified test setup's so the are ran for group... tree | commitdiff
2015-07-23 tcofoegbuJAL-1819 Test cases for Identify file tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-07 tcofoegbuJAL-1805 test envirionment separation tree | commitdiff
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring tree | commitdiff
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11 tree | commitdiff
2015-06-24 Jim ProcterJAL-1782 refactored JAL-1766 JAL-653 tests to TestNG tree | commitdiff
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... tree | commitdiff
2015-06-22 Jim ProcterJAL-1270 fix logic in stockholm test allowing annotatio... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 JAL-1140 added RNAML example alignment... tree | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... tree | commitdiff
2015-06-19 tcofoegbuJAL-1270 test suits import order refactor features/JAL-1270_JUnit-to-TestNG features/JAL-1782_JUnit-to-TestNG tree | commitdiff
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring tree | commitdiff
2015-06-18 Jim ProcterJAL-653 patch broken test code - test still not passing tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments tree | commitdiff
2015-06-15 Jim ProcterJAL-1665 patch for regression: failing jalview.ws.jabaw... tree | commitdiff
2015-06-07 Jim ProcterJAL-653 test for GFF file recognition and alignment... tree | commitdiff
2015-06-06 Jim ProcterJAL-653 test and testdata for importing GFF3 file with... tree | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 codon frames go on the dataset tree | commitdiff
2015-06-05 Jim ProcterJAL-653 JAL-845 test to check exonerate cDNA-Protein... tree | commitdiff
2015-06-04 tcofoegbuJAL-1756 fix failed test as a result of runing the... tree | commitdiff
2015-05-27 tcofoegbuJAL-1740 updated synch codes to use a git repo rather... features/JAL-1740_Decoup-BioJS tree | commitdiff
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater tree | commitdiff
2015-05-20 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop tree | commitdiff
2015-05-20 tcofoegbuJAL-1541 minor code clean up, and added test for BioJsH... tree | commitdiff
2015-05-19 tcofoegbuMerge branch 'features/JAL-1541_BioJsMSA' into develop tree | commitdiff
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... tree | commitdiff
2015-05-14 gmungocJAL-1727 JAL-1270 obsolete DAS registry URL updated... tree | commitdiff
2015-05-14 gmungocJAL-1270 set Cache properties in setUp to ensure test... tree | commitdiff
2015-05-13 gmungocJAL-1712 fixes/tests for Castor binding of EMBL XML... tree | commitdiff
2015-05-13 tcofoegbuFixed some broken tests tree | commitdiff
2015-05-12 tcofoegbuJAL_1641 updated test -- added test for annotations tree | commitdiff
2015-05-12 tcofoegbuJAL_1641 added unit test and minor house keeping tree | commitdiff
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