2020-09-02 |
Ben Soares | JAL-3280 Test for remote release build_properties file... |
tree | commitdiff |
2020-08-27 |
Ben Soares | Merge branch 'releases/Release_2_11_1_Branch' into... merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch |
tree | commitdiff |
2020-08-21 |
Jim Procter | JAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615... |
tree | commitdiff |
2020-08-18 |
gmungoc | JAL-3692 parse multiline CDS location correctly |
tree | commitdiff |
2020-08-17 |
Jim Procter | Merge branch 'patch/JAL-3561_JAL-3660_fileformatexport_... |
tree | commitdiff |
2020-08-17 |
Jim Procter | Merge branch 'patch/Release_2_11_1_Branch_patch_JAL... |
tree | commitdiff |
2020-08-13 |
Ben Soares | JAL-3597 Increased heap passmark to <= 45MB and report... |
tree | commitdiff |
2020-08-13 |
gmungoc | JAL-3597 slight tidying of code and Javadoc, passmark... |
tree | commitdiff |
2020-08-13 |
gmungoc | JAL-3597 additional references nulled, bug in test... |
tree | commitdiff |
2020-08-10 |
gmungoc | JAL-3490 match count independent of contiguous matches... patch/Release_2_11_1_Branch_patch_JAL-3490 |
tree | commitdiff |
2020-08-05 |
Jim Procter | JAL-3628 init log after loading testProps for each... |
tree | commitdiff |
2020-08-05 |
gmungoc | JAL-3692 unit test updated for ?gzip download endpoint URL patch/JAL-3692enaEndpointFlatfile |
tree | commitdiff |
2020-08-05 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped... |
tree | commitdiff |
2020-08-03 |
Jim Procter | JAL-3692 fix up test for 2.11.1 series datamodel API |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 set CDS /product as EMBLCDSPROTEIN description |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 parse DE for description, and other refactoring... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 URL tests updated |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 EMBL flatfile fetcher / parser (todo: CDS... |
tree | commitdiff |
2020-07-31 |
Ben Soares | Merge branch 'releases/Release_2_11_1_Branch' into... |
tree | commitdiff |
2020-07-28 |
Jim Procter | JAL-3615 update tests for Rfam/Pfam specific gzip endpoints |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for... |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3621 corrected sequence feature sort and test |
tree | commitdiff |
2020-06-29 |
Jim Procter | JAL-3493 failing test - creates a highlight and column... |
tree | commitdiff |
2020-06-29 |
Jim Procter | Merge branch 'bug/JAL-3490findSpanHiddenGaps' into... |
tree | commitdiff |
2020-06-16 |
Jim Procter | Merge branch 'bug/JAL-3561_translatefileformats' into... patch/JAL-3561_JAL-3660_fileformatexport_CLI |
tree | commitdiff |
2020-06-16 |
Jim Procter | JAL-3561 JAL-3660 check resolved FileFormatI instances... |
tree | commitdiff |
2020-05-01 |
gmungoc | JAL-3613 check sequence overlap when matching search... |
tree | commitdiff |
2020-04-21 |
Jim Procter | Merge branch 'bug/JAL-3574filterByPOS' into documentati... |
tree | commitdiff |
2020-04-21 |
Jim Procter | Merge branch 'bug/JAL-3567virtualFeatureCoordinates... |
tree | commitdiff |
2020-04-21 |
Jim Procter | JAL-3567 translated rather than imputed peptide |
tree | commitdiff |
2020-04-17 |
gmungoc | JAL-3567 unit tests for linked feature tooltips |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 adjust layout of linked feature report, unit... |
tree | commitdiff |
2020-04-16 |
gmungoc | JAL-3567 report mapped location for virtual features... |
tree | commitdiff |
2020-04-14 |
Jim Procter | Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into... |
tree | commitdiff |
2020-04-14 |
Jim Procter | JAL-3529 revert ordering of DBRef addition so it reflec... |
tree | commitdiff |
2020-04-14 |
Jim Procter | JAL-3597 improved Memory test suite by detecting base... |
tree | commitdiff |
2020-04-13 |
gmungoc | JAL-3574 test coverage corners bug/JAL-3574filterByPOS |
tree | commitdiff |
2020-04-13 |
gmungoc | JAL-3574 Matcher with integer/long value pattern (e... |
tree | commitdiff |
2020-03-31 |
gmungoc | JAL-1889 better (?) wait for Conservation thread |
tree | commitdiff |
2020-03-20 |
Jim Procter | JAL-3562 exclude testNG groups from a build via -Ptestn... |
tree | commitdiff |
2020-03-20 |
Jim Procter | JAL-3561 failing test verifying expected fileformat... |
tree | commitdiff |
2020-03-09 |
gmungoc | JAL-3528 unit tests added for failed lookup, Javadoc |
tree | commitdiff |
2020-03-06 |
gmungoc | JAL-3187 unit test for findComplementFeaturesAtResidue |
tree | commitdiff |
2020-03-06 |
gmungoc | Merge branch 'feature/JAL-3468featureDescriptionEllipsi... |
tree | commitdiff |
2020-03-06 |
gmungoc | JAL-3468 i18n and additional unit tests feature/JAL-3468featureDescriptionEllipsis |
tree | commitdiff |
2020-03-06 |
Ben Soares | JAL-3529 improved regex in Stockholm UNIPROT accession... |
tree | commitdiff |
2020-03-04 |
Ben Soares | JAL-3468 Fixed tests and added test for max-length... |
tree | commitdiff |
2020-02-27 |
Jim Procter | JAL-3412 patch for failing test |
tree | commitdiff |
2020-02-27 |
Jim Procter | Merge branch 'bug/JAL-3412idWidthDiscrepancy' into... bug/JAL-3412idWidthDiscrepancy |
tree | commitdiff |
2020-02-27 |
Jim Procter | Merge branch 'bug/JAL-3296changeStartInvalidateCursor... |
tree | commitdiff |
2020-02-18 |
Ben Soares | JAL-3449 merge from develop |
tree | commitdiff |
2020-02-18 |
Jim Procter | JAL-3529 test for AC <Uniprot/EMBL> rather than DR... |
tree | commitdiff |
2020-02-18 |
Jim Procter | JAL-3529 assert Uniprot refs must be provided as primar... |
tree | commitdiff |
2020-02-17 |
Ben Soares | JAL-3341 Increase number of lines looked at by test... |
tree | commitdiff |
2020-02-17 |
Jim Procter | JAL-3536 failing test and test data |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3531 failing test |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3529 more detailed asserts to detect whitespace... |
tree | commitdiff |
2020-02-14 |
Jim Procter | JAL-3529 failing test for bug |
tree | commitdiff |
2020-02-06 |
gmungoc | JAL-1842 unit test updated for EnsemblGene feature... bug/JAL-3509hideResnum |
tree | commitdiff |
2020-01-29 |
Ben Soares | JAL-3341 Increase number of lines looked at by test... |
tree | commitdiff |
2020-01-28 |
gmungoc | JAL-3341 debug for failing unit test bug/JAL-3341unitTestFails |
tree | commitdiff |
2020-01-28 |
gmungoc | Merge branch 'feature/JAL-3121gffAttributeMap' into... |
tree | commitdiff |
2020-01-24 |
gmungoc | JAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap |
tree | commitdiff |
2020-01-23 |
gmungoc | JAL-3121 'attributes map' in GFF3 without special ... |
tree | commitdiff |
2020-01-16 |
Jim Procter | Merge branch 'improvement/JAL-3449_add_install4j_instal... |
tree | commitdiff |
2019-12-12 |
gmungoc | JAL-3490 unit test for ignore hidden regions with selec... |
tree | commitdiff |
2019-12-12 |
Jim Procter | JAL-2305 moved failing CrossRef tests to Functional_Fai... |
tree | commitdiff |
2019-12-11 |
gmungoc | JAL-3490 tests for skip hidden regions (and a bug fix) |
tree | commitdiff |
2019-12-11 |
gmungoc | JAL-3490 revised layout and search algorithm (more... |
tree | commitdiff |
2019-11-29 |
gmungoc | JAL-3490 Finder match across entirely gapped hidden... |
tree | commitdiff |
2019-11-18 |
Ben Soares | JAL-3477 New sensible default decisions on memory,... |
tree | commitdiff |
2019-11-01 |
gmungoc | JAL-3468 unit tests updated for changes |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 slightly cleaner parsing of, and unit test... |
tree | commitdiff |
2019-08-22 |
gmungoc | Merge branch 'develop' into feature/JAL-3121gffAttributeMap |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3187 case-insensitive codon variant calculation |
tree | commitdiff |
2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued... |
tree | commitdiff |
2019-08-19 |
gmungoc | JAL-3412 calculateIdWidth - more consistency, constants... |
tree | commitdiff |
2019-08-09 |
gmungoc | JAL-3187 removal of variant feature (non-virtual) trans... |
tree | commitdiff |
2019-07-26 |
gmungoc | Merge branch 'features/JAL-3375vcfValidation' into |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-1793 only decode specific special characters in... |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation |
tree | commitdiff |
2019-07-26 |
gmungoc | JAL-3375 format validate VCF Integer and Float fields |
tree | commitdiff |
2019-07-25 |
gmungoc | JAL-3375 ignore '.' values for VCF data |
tree | commitdiff |
2019-07-10 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures |
tree | commitdiff |
2019-07-08 |
gmungoc | JAL-3187 derived peptide variants tweaks and tests |
tree | commitdiff |
2019-07-05 |
gmungoc | JAL-1793 apply URL decoding when saving VCF attribute... |
tree | commitdiff |
2019-06-26 |
Jim Procter | JAL-3332 test to check for duplicate db sources and... |
tree | commitdiff |
2019-06-26 |
Jim Procter | JAL-3330 JAL-3332 relocate and simplify BeforeClass... |
tree | commitdiff |
2019-06-26 |
Jim Procter | JAL-3330 test to verify sub/attributeName array is... |
tree | commitdiff |
2019-06-18 |
Jim Procter | Merge branch 'bug/JAL-2830_editManglesDatasetSequence... |
tree | commitdiff |
2019-06-18 |
gmungoc | JAL-3304 option to export linked features in Jalview... |
tree | commitdiff |
2019-06-17 |
gmungoc | JAL-2792 JAL-3187 linked features (if shown) in Feature... |
tree | commitdiff |
2019-06-17 |
gmungoc | JAL-3187 update alignAs code and unit tests for 'shared... |
tree | commitdiff |
2019-06-17 |
gmungoc | JAL-3187 update unit test - protein variants not now... |
tree | commitdiff |
2019-06-17 |
gmungoc | JAL-3187 add sequence to feature details table (and... |
tree | commitdiff |
2019-06-14 |
gmungoc | JAL-3302 transfer visible 'linked' features to Chimera |
tree | commitdiff |
2019-06-10 |
gmungoc | JAL-3296 ensure sequence cursor reset when sequence... bug/JAL-3296changeStartInvalidateCursor |
tree | commitdiff |
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