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JAL-845 refinements + tests for making mappings between alignments
[jalview.git]
/
test
/
2015-03-13
gmungoc
JAL-845 refinements + tests for making mappings between...
tree
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commitdiff
2015-03-13
gmungoc
JAL-1685 fixed
tree
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commitdiff
2015-03-11
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2015-03-11
gmungoc
JAL-1685 further tests
features/JAL-845splitPaneMergeDevelop
tree
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commitdiff
2015-03-11
gmungoc
JAL-1685 tests added for ambiguity codes (including...
tree
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commitdiff
2015-03-11
gmungoc
JAL-845 cDNA mapping: select on sequence translation...
tree
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commitdiff
2015-03-10
gmungoc
JAL-1680 group consensus speeded up with a different...
tree
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commitdiff
2015-03-10
gmungoc
JAL-1681 show cDNA consensus on protein alignment ...
tree
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commitdiff
2015-03-06
Jim Procter
Merge branch 'develop' into features/JAL-845splitPaneMe...
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit '6797d65989b01c8fa5bdeaf6a66e35279b66a7f7...
tree
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commitdiff
2015-03-05
gmungoc
Merge branch 'develop' into features/JAL-845splitPaneMe...
tree
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commitdiff
2015-03-05
gmungoc
JAL-845 minor tidy / tests / javadoc tweaks
tree
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commitdiff
2015-03-05
gmungoc
JAL-1270 tests added
tree
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commitdiff
2015-03-03
gmungoc
JAL-845 implement alignment of protein to match cDNA...
tree
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commitdiff
2015-02-27
gmungoc
JAL-845 SplitFrame for "show product" and after alignin...
tree
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commitdiff
2015-02-20
gmungoc
JAL-1673 additional test (and trim of PDB resnum value)
tree
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commitdiff
2015-02-19
gmungoc
JAL-845 applet colour by tree; translate as cDNA; pull...
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1350 forgot to remove empty test
tree
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commitdiff
2015-02-12
Jim Procter
JAL-1350 cloned method and tested equivalence for using...
tree
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commitdiff
2015-02-12
gmungoc
Merge remote-tracking branch 'origin/merge/JAL-845_JAL...
tree
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commitdiff
2015-02-11
gmungoc
JAL-845 handling eXpand/Gather split frame views
tree
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commitdiff
2015-02-10
gmungoc
JAL-1264 unit tests fixed (have to explicit set annotat...
tree
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commitdiff
2015-02-09
Jim Procter
Merge branch 'features/JAL-845splitPaneMergeDevelop...
tree
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commitdiff
2015-02-09
gmungoc
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2015-02-06
gmungoc
JAL-845 further code/tests/refactoring
tree
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commitdiff
2015-02-03
gmungoc
comment only
tree
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commitdiff
2015-02-03
gmungoc
Comments added
tree
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commitdiff
2015-02-03
gmungoc
JAL-845 code/refactoring/tests related to linking DNA...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 setStyle method and associated tests (required...
tree
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commitdiff
2015-02-02
Jim Procter
JAL-1640 copy constructor test and implementation by...
tree
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commitdiff
2015-01-30
gmungoc
JAL-845 linked protein/dna 'slave' further PoC function...
features/JAL-845linkedProteinDnaEditing
tree
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commitdiff
2015-01-27
Jim Procter
JAL-674 JAL-1270 added settings to ensure temperature...
tree
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1541 changed assert to JUnit assert - test now...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 tweak signature of core annotation printer...
tree
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commitdiff
2015-01-23
gmungoc
Random DNA generator tarted up
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 source code formatting
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
tree
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commitdiff
2015-01-22
gmungoc
JAL-1619 refactoring / tests to support 'align linked...
tree
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commitdiff
2015-01-20
gmungoc
JAL-1619 test that reordering cDNA does not change...
tree
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commitdiff
2015-01-20
gmungoc
JAL-1619 tweaked for better reusability
tree
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commitdiff
2015-01-19
gmungoc
JAL-1619 refactored cDNA translation; modified codon...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 new entry point for reading annotation files...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 new method to get a list of insertions in...
tree
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commitdiff
2015-01-18
Jim Procter
always use interface rather than field access
tree
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commitdiff
2015-01-18
gmungoc
JAL-1619 refactoring wip
tree
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commitdiff
2015-01-16
gmungoc
JAL-1619 refactoring in progress for Dna translation
tree
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commitdiff
2015-01-12
gmungoc
JAL-1619 load/align cDNA for protein (wip)
tree
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commitdiff
2015-01-07
Jim Procter
Merge branch 'develop' into JAL-1483_29dev
tree
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commitdiff
2015-01-07
Jim Procter
JAL-1483 basic test of sequence similarity score model...
tree
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commitdiff
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
tree
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commitdiff
2015-01-04
gmungoc
JAL-1619 first draft of 'linked protein and cDNA'
tree
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commitdiff
2014-12-28
gmungoc
Merge branch 'features/JAL-1596ChimeraREST' into develop
tree
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commitdiff
2014-12-28
gmungoc
JAL-845 first working linked edit protein -> cDNA
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-16
gmungoc
JAL-1328 System.exit() removed as it aborts an entire...
tree
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commitdiff
2014-12-16
gmungoc
JAL-845 first simple unit tests added
tree
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commitdiff
2014-12-16
gmungoc
JAL-845 move main method to 'test' class (needs further...
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-12-14
Jim Procter
JAL-1617 test to verify Uniprot cross-references are...
tree
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commitdiff
2014-12-05
gmungoc
JAL-1609 refactored colour by sequence command, now...
tree
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commitdiff
2014-12-01
Jim Procter
Merge branch 'bug/JAL-1610refAnnotationsInViews' into...
tree
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commitdiff
2014-11-28
gmungoc
JAL-1610 check reference annotations against alignment...
tree
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into develop
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 bug in test
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 test that PDB annotation created when importing...
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 patch NPE bug when test run in isolation
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 fix test properties path and add properties...
tree
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commitdiff
2014-11-25
Charles Ofoegbu
merge commit
tree
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commitdiff
2014-11-25
gmungoc
JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
tree
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
tree
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 refactoring of stockholm test
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 revise tests to count number and type of annot...
tree
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commitdiff
2014-11-19
gmungoc
JAL-1342 new command-line parameter -jabaws <URL>
tree
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commitdiff
2014-11-18
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-18
Jim Procter
Merge branch 'JAL-1587_promotedisorder' into develop
tree
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commitdiff
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1573 unit test added to verify Help target enum...
tree
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commitdiff
2014-11-14
Charles Ofoegbu
Merge branch 'features/JAL-1541_BioJsMSAViewer-export...
tree
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commitdiff
2014-11-14
Charles Ofoegbu
House keeping
tree
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commitdiff
2014-11-12
Jim Procter
JAL-674 new tests and deprecated tests for PDB mapping...
tree
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commitdiff
2014-11-06
Jim Procter
Merge branch 'features/JAL-1152annotationSorting' into...
tree
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commitdiff
2014-11-04
gmungoc
JAL-1152 annotation sort algorithm optimisation
tree
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commitdiff
2014-11-04
Jim Procter
JAL-1213 test to ensure JMol extracted sequences are...
tree
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commitdiff
2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotation...
tree
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commitdiff
2014-11-03
Jim Procter
JAL-1578 test property accessors/copy constructor
tree
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commitdiff
2014-11-03
Jim Procter
JAL-674 peptide structure input so test is not dependen...
tree
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commitdiff
2014-10-31
gmungoc
JAL-1152 bug fix for 'no sort' case + tests for autocal...
tree
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commitdiff
2014-10-31
gmungoc
JAL-1152 menu tweaks plus new option to put Autocalc...
tree
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commitdiff
2014-10-31
Jim Procter
JAL-674 JAL-961 pass row reference to handler to check...
tree
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commitdiff
2014-10-30
Jim Procter
Merge branch 'develop' into features/ssFromPDBEntry
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 count number of annotation transferred in test
tree
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commitdiff
2014-10-30
gmungoc
JAL-1152 with sticky annotation sort order that updates...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 patch test to verify presence of annotation...
tree
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commitdiff
2014-10-30
gmungoc
JAL-1152 prototype of new Annotations menu with sort...
tree
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commitdiff
2014-10-29
Jim Procter
JAL-1264 JAL-674 test to exercise the AlignmentAnnotati...
tree
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commitdiff
2014-10-28
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
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