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JAL-2465 bugfix and rerefactor renamed getPdbFile() method to getStructureFile()
[jalview.git] / utils /
2016-11-28 Jim ProcterJAL-2325 JAL-1878 update minimum versions of JRE for... tree | commitdiff
2016-11-25 Jim ProcterJAL-2325 JAL-2273 update vms bound to different installers tree | commitdiff
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11... tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-06 gmungocJAL-2252 now buffered read of 3 lines of a time in... tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 formatting and GPL tree | commitdiff
2016-09-13 gmungocJAL-2119 use File.separator not "/" tree | commitdiff
2016-09-12 gmungocJAL-2119 case-sensitive href filename checking tree | commitdiff
2016-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-09-08 Jim ProcterJAL-2119 pass/resolve real help dir in link checker tree | commitdiff
2016-09-08 Jim ProcterJAL-2119 non-zero exit if any invalid links tree | commitdiff
2016-09-08 Jim ProcterJAL-2119 count and report total invalid anchor links tree | commitdiff
2016-09-02 gmungocJAL-1854 distinct messages for TODO/FIXME and DOCUMENT ME tree | commitdiff
2016-09-01 gmungocJAL-1854 rule to disallow import of swing in appletgui tree | commitdiff
2016-08-29 gmungocJAL-1854 tweaks to rules and README tree | commitdiff
2016-08-29 gmungocJAL-1854 checkstyle relocated to /utils, newlines to... tree | commitdiff
2016-08-24 gmungocJAL-1424 enhanced for cleaner reporting, checks calls... tree | commitdiff
2016-08-24 gmungocJAL-1424 also report (obsolete) keys in translated... tree | commitdiff
2016-08-08 gmungocJAL-2119 updates to invalid / obsolete help links tree | commitdiff
2016-06-01 gmungocJAL-1424 clearer messaging tree | commitdiff
2016-06-01 gmungocJAL-1424 utility to check resource bundle labels used... tree | commitdiff
2016-05-30 gmungocJAL-2119 help links checker added to /utils tree | commitdiff
2016-05-26 Jim ProcterJAL-2030 - add servlet-api-3.1.jar to installAnywhere... tree | commitdiff
2016-04-25 Jim ProcterJAL-2074 reinstate upgrade to groovy 2.8.4-indy tree | commitdiff
2016-04-25 Jim ProcterJAL-2074 backed out groovy upgrade - back to 1.8.2 tree | commitdiff
2016-04-20 Jim ProcterJAL-2074 updated groovy-all to 2.4.6-indy tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 add licensing tree | commitdiff
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch tree | commitdiff
2015-09-22 gmungocJAL-1424 tidied output tree | commitdiff
2015-09-18 Jim ProcterJAL-1888 set verbosity and exclude the 'parallel' attri... tree | commitdiff
2015-09-18 gmungocJAL-1424 Ant task to report missing language bundle... tree | commitdiff
2015-09-16 Jim ProcterJAL-1612 JAL-1439 JAL-1845 OSX Installers set Xdock... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils tree | commitdiff
2015-09-02 Jim ProcterJAL-1853 add test to list for ant task tree | commitdiff
2015-08-27 Jim ProcterJAL-1844 adding more missing jars - jersey, other json... tree | commitdiff
2015-08-27 Jim Procterfix for JAL-1844 add jersey-core,json,client-1.19 to... tree | commitdiff
2015-08-17 gmungocJAL-1551 updated to reflect changes to Eclipse preferen... tree | commitdiff
2015-08-17 gmungocJAL-1551 properties sorted (unchanged) for ease of... tree | commitdiff
2015-07-23 Jim ProcterMerge branch 'features/JAL-1759jmolUpdate' into develop tree | commitdiff
2015-07-23 Jim ProcterMerge branch 'task/JAL-1794_jettyExamplesServer' into... tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-03 gmungocJAL-1759 updated Jmol version in nbproject, install... tree | commitdiff
2015-07-03 gmungocJAL-892 jnlp, installAnywhere, build, licence reference... features/JAL-892varnaToProject tree | commitdiff
2015-06-25 Jim ProcterJAL-1794 simple file server class - configured for... task/JAL-1794_jettyExamplesServer tree | commitdiff
2015-06-23 Jim ProcterMerge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892... tree | commitdiff
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... tree | commitdiff
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into... tree | commitdiff
2015-06-17 Jim ProcterJAL-1783 add java 1.7 and 1.8 class numbers tree | commitdiff
2015-06-12 Jim ProcterJAL-1766 update HTSJDK to Version 1.133 tree | commitdiff
2015-06-08 Jim ProcterJAL-1766 added a snapshot build of the htsjdk tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement... tree | commitdiff
2015-02-05 Jim ProcterJAL-1643 added quaqua filechooser and jni libraries... tree | commitdiff
2015-01-21 Jim Proctertidy up class files that shouldn't be in repo tree | commitdiff
2015-01-20 Charles Ofoegbuclean up tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-08 Charles Ofoegbumerge commit tree | commitdiff
2014-12-02 Jim ProcterJAL-1602 tweak VM inclusion options tree | commitdiff
2014-12-02 Jim ProcterJAL-1602 typo in jsonsimple jar tree | commitdiff
2014-12-02 Jim ProcterJAL-1602 add missing jars to install tree | commitdiff
2014-12-01 Jim ProcterJAL-1602 upgrade to InstallAnywhere 2014 J17 runtimes tree | commitdiff
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... tree | commitdiff
2014-11-13 Jim ProcterJAL-1469 added jfreesvg to desktop dependencies tree | commitdiff
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config tree | commitdiff
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config tree | commitdiff
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config tree | commitdiff
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config tree | commitdiff
2014-10-21 Jim ProcterJWS-59 JAL-1216 patch broken InstallAnywhere build tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 crlf tree | commitdiff
2014-10-21 Jim ProcterJAL-1216 update to VARNA 3.91 tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 crlf changes tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-07-22 j.procter@dundee... JAL-1333 log4j/slf additional jars tree | commitdiff
2014-06-06 Jim ProcterJAL-1518 drop Jalopy from utils directory tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1458 updated logo for installer tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into develop tree | commitdiff
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch tree | commitdiff
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch tree | commitdiff
2013-11-25 Jim ProcterJAL-1139 latest version of proguard needed for Java... tree | commitdiff
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into develop tree | commitdiff
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