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2021-06-09	Jim Procter	JAL-3840 don’t update the modal residue count for gaps	commit \| commitdiff \| tree
2021-06-09	Jim Procter	fixes JAL-3840	commit \| commitdiff \| tree
2021-06-09	Jim Procter	JAL-3840 failing test - show that addGaps overflows	commit \| commitdiff \| tree
2020-11-13	Jim Procter	JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...	commit \| commitdiff \| tree
2020-10-28	Jim Procter	JAL-3760 fix tests for changed behaviour	commit \| commitdiff \| tree
2020-10-28	Jim Procter	JAL-3760 refactor nucleotide proportion test to per...	commit \| commitdiff \| tree
2020-10-28	Jim Procter	Merge branch 'portforward/JAL-3765_patch_to_2112' into...	commit \| commitdiff \| tree
2020-10-28	Jim Procter	JAL-3765 fix test	commit \| commitdiff \| tree
2020-10-28	Jim Procter	fix for JAL-3765	commit \| commitdiff \| tree
2020-09-21	Jim Procter	Merge branch 'merge_review/JAL-3490_2_11_2_develop...	commit \| commitdiff \| tree
2020-09-10	Jim Procter	JAL-3746 bump release version for 2.11.2 series (currently...	commit \| commitdiff \| tree
2020-08-31	Jim Procter	JAL-3680 merged description of individual cursor key...	commit \| commitdiff \| tree
2020-08-31	Jim Procter	JAL-3732 - sequences can be moved up/down in cursor...	commit \| commitdiff \| tree
2020-08-21	Jim Procter	JAL-3615 code tidy, improve unit test	commit \| commitdiff \| tree
2020-08-17	Jim Procter	JAL-3490 don't init the combo box's history cache for...	commit \| commitdiff \| tree
2020-08-17	Jim Procter	JAL-3490 merged with 2.11.2 develop	commit \| commitdiff \| tree
2020-08-17	Jim Procter	Merge branch 'task/JAL-3597memoryLeakTest' into develop	commit \| commitdiff \| tree
2020-08-12	Jim Procter	Merge branch 'task/JAL-3608_property_set_laf_and_tests...	commit \| commitdiff \| tree
2020-08-03	Jim Procter	Merge branch 'bug/JAL-2983negativeSliderMin' into develop	commit \| commitdiff \| tree
2020-07-29	Jim Procter	JAL-3371 JAL-2983 don't modify 'extent' of slider ...	commit \| commitdiff \| tree
2020-07-28	Jim Procter	Merge branch 'feature/JAL-3615gzipXfam' into develop	commit \| commitdiff \| tree
2020-07-28	Jim Procter	JAL-3615 JAL-2656 missing import after cherrypick	commit \| commitdiff \| tree
2020-07-28	Jim Procter	JAL-2656 recognise non-HTTP URI input streams as gzipped...	commit \| commitdiff \| tree
2020-07-28	Jim Procter	JAL-2656 recognise Gzipped file input streams by their...	commit \| commitdiff \| tree
2020-07-28	Jim Procter	JAL-3615 update tests for Rfam/Pfam specific gzip endpoints	commit \| commitdiff \| tree
2020-07-27	Jim Procter	JAL-3697 show total number of features not shown	commit \| commitdiff \| tree
2020-07-27	Jim Procter	JAL-3696 log the error message from the exception to...	commit \| commitdiff \| tree
2020-07-27	Jim Procter	JAL-3695 htsjdk 2.12 -> 2.23 (library change only,...	commit \| commitdiff \| tree
2020-06-29	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2020-06-29	Jim Procter	JAL-3675 2.11.1.1 release notes	commit \| commitdiff \| tree
2020-06-29	Jim Procter	JAL-3493 clear search highlights when escape/deselect all	commit \| commitdiff \| tree
2020-06-29	Jim Procter	JAL-3493 failing test - creates a highlight and column...	commit \| commitdiff \| tree
2020-06-26	Jim Procter	JAL-3673 make sure font metrics are updated if dealing...	commit \| commitdiff \| tree
2020-06-26	Jim Procter	JAL-3518 fix highlighting in Jalview for selections...	commit \| commitdiff \| tree
2020-06-26	Jim Procter	JAL-3672 debug=false means no debug output	commit \| commitdiff \| tree
2020-06-26	Jim Procter	JAL-3672 more efficient when debug not enabled	commit \| commitdiff \| tree
2020-06-26	Jim Procter	JAL-3671 hardwire log4j.root logger to INFO to supress...	commit \| commitdiff \| tree
2020-05-25	Jim Procter	JAL-3626 rescue automatic configuration of JALVIEW_VERSION...	commit \| commitdiff \| tree
2020-05-24	Jim Procter	JAL-3407 redact Java 8 incompatible '<>' with anonymous...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	Merge branch 'documentation/JAL-3407_2.11.1_release...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-3407 add GPL license to Jalview source files	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-3407 release notes - JAL-247 - for auto-set-ID...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	Merge branch 'documentation/JAL-3407_2.11.1_release...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-3407 fix JAL-3574 - remove from known issues for...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	Merge branch 'documentation/JAL-3407_2.11.1_release...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-3574 JAL-3407 release notes	commit \| commitdiff \| tree
2020-04-21	Jim Procter	Merge branch 'bug/JAL-3574filterByPOS' into documentation...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	Merge branch 'documentation/JAL-3407_2.11.1_release...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-3407 add and document ComputePeptideVariants.groovy	commit \| commitdiff \| tree
2020-04-21	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-3567 JAL-3407 document sequence features report...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	Merge branch 'bug/JAL-3567virtualFeatureCoordinates...	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-367 code tidy	commit \| commitdiff \| tree
2020-04-21	Jim Procter	JAL-3567 translated rather than imputed peptide	commit \| commitdiff \| tree
2020-04-14	Jim Procter	JAL-3407 JAL-3529 release notes	commit \| commitdiff \| tree
2020-04-14	Jim Procter	Merge branch 'bug/JAL-3529_uniprotidsinstockholm' into...	commit \| commitdiff \| tree
2020-04-14	Jim Procter	JAL-3529 revert ordering of DBRef addition so it reflects...	commit \| commitdiff \| tree
2020-04-14	Jim Procter	JAL-3597 improved Memory test suite by detecting base...	commit \| commitdiff \| tree
2020-04-14	Jim Procter	JAL-3407 release date set to 16th April, known issue...	commit \| commitdiff \| tree
2020-04-14	Jim Procter	Merge branch 'testing/JAL-3577_jalviewversion_autoset_fixed...	commit \| commitdiff \| tree
2020-04-09	Jim Procter	JAL-3577 automatically configure JALVIEW_VERSION for...	commit \| commitdiff \| tree
2020-04-06	Jim Procter	JAL-3407 redact java 8 incompatible type inference	commit \| commitdiff \| tree
2020-04-06	Jim Procter	JAL-3407 updated release date to Thursday 9th April...	commit \| commitdiff \| tree
2020-03-31	Jim Procter	Merge branch 'documentation/Release_2_11_1_Branch'...	commit \| commitdiff \| tree
2020-03-31	Jim Procter	JAL-3407 basic doc for releasing jalview - will be...	commit \| commitdiff \| tree
2020-03-31	Jim Procter	JAL-3407 updated release date to 2nd April, and first...	commit \| commitdiff \| tree
2020-03-31	Jim Procter	Merge branch 'documentation/Release_2_11_1_Branch'...	commit \| commitdiff \| tree
2020-03-30	Jim Procter	JAL-3407 2.11.1.0 release date bump - maybe tomorrow...	commit \| commitdiff \| tree
2020-03-30	Jim Procter	JAL-3407 JAL-3130 back out java 9+ syntax that breaks...	commit \| commitdiff \| tree
2020-03-20	Jim Procter	JAL-3562 exclude testNG groups from a build via -PtestngExcl...	commit \| commitdiff \| tree
2020-03-20	Jim Procter	JAL-3407 JAL-3562 release notes	commit \| commitdiff \| tree
2020-03-20	Jim Procter	JAL-3407 rejigging new features - simplify release...	commit \| commitdiff \| tree
2020-03-20	Jim Procter	JAL-3407 reformat releases.html	commit \| commitdiff \| tree
2020-03-20	Jim Procter	JAL-3407 JAL-3549 javadoc	commit \| commitdiff \| tree
2020-03-20	Jim Procter	JAL-3407 - release notes for JAL-3547	commit \| commitdiff \| tree
2020-03-20	Jim Procter	JAL-3549 javadoc	commit \| commitdiff \| tree
2020-03-16	Jim Procter	JAL-3407 JAL-3187 help documentation for virtual features...	commit \| commitdiff \| tree
2020-03-16	Jim Procter	JAL-3407 JAL-3549 explicitly mention the ‘no features...	commit \| commitdiff \| tree
2020-03-16	Jim Procter	JAL-3407 group together ‘virtual feature’ related features...	commit \| commitdiff \| tree
2020-03-16	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2020-03-05	Jim Procter	Merge branch 'improvement/JAL-3543_dont_report_null_versions...	commit \| commitdiff \| tree
2020-03-03	Jim Procter	Merge branch 'groovy/JAL-3547_conservationsequenceexport...	commit \| commitdiff \| tree
2020-03-03	Jim Procter	JAL-3547 groovy script to get the conservation sequence...	commit \| commitdiff \| tree
2020-03-02	Jim Procter	JAL-3407 redact Java 8 incompatible '<>' with anonymous...	commit \| commitdiff \| tree
2020-02-27	Jim Procter	Merge branch 'bug/JAL-3412idWidthDiscrepancy' into...	commit \| commitdiff \| tree
2020-02-27	Jim Procter	JAL-3407 release notes for JAL-3412	commit \| commitdiff \| tree
2020-02-27	Jim Procter	JAL-3412 patch for failing test	commit \| commitdiff \| tree
2020-02-27	Jim Procter	Merge branch 'bug/JAL-3412idWidthDiscrepancy' into...	commit \| commitdiff \| tree
2020-02-27	Jim Procter	JAL-3407 JAL-3296 release notes	commit \| commitdiff \| tree
2020-02-27	Jim Procter	Merge branch 'bug/JAL-3296changeStartInvalidateCursor...	commit \| commitdiff \| tree
2020-02-26	Jim Procter	JAL-3477 jalview.jvmmemmax / jvmmemmax maximum value...	commit \| commitdiff \| tree
2020-02-26	Jim Procter	Merge branch 'bug/JAL-3477_memory_max_allocation' into...	commit \| commitdiff \| tree
2020-02-26	Jim Procter	JAL-3407 release notes for JAL-3449 JAL-3393 JAL-3420...	commit \| commitdiff \| tree
2020-02-26	Jim Procter	Merge branch 'improvement/JAL-3449_add_install4j_installer_g...	commit \| commitdiff \| tree
2020-02-26	Jim Procter	JAL-3541 docs for enabling OpenClover coverage reports...	commit \| commitdiff \| tree
2020-02-26	Jim Procter	JAL-3541 removed clover report generation debug flag...	commit \| commitdiff \| tree
2020-02-26	Jim Procter	JAL-3541 configurables for clover report generation...	commit \| commitdiff \| tree
2020-02-25	Jim Procter	JAL-3541 track own jalview.gui.Desktop clover source...	commit \| commitdiff \| tree
2020-02-25	Jim Procter	JAL-3541 2g heap for clover xml and clover html - remove...	commit \| commitdiff \| tree
2020-02-25	Jim Procter	JAL-3541 add verbose and heap setting for HTML Report...	commit \| commitdiff \| tree
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