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JAL-3808 handle 1:1 mappings in exonerate gff2 using the ‘similarity’ feature extent...
2021-02-03 Jim ProcterJAL-3808 handle 1:1 mappings in exonerate gff2 using...
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2021-02-03 Jim ProcterJAL-3808 example exonerate cdna2genome and coding2genome...
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2020-10-28 Jim ProcterJAL-3760 fix tests for changed behaviour
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2020-10-28 Jim ProcterJAL-3760 refactor nucleotide proportion test to per...
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2020-10-28 Jim ProcterMerge branch 'portforward/JAL-3765_patch_to_2112' into...
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2020-10-28 Jim ProcterJAL-3765 fix test
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2020-10-28 Jim Procterfix for JAL-3765
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2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop...
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2020-09-10 Jim ProcterJAL-3746 bump release version for 2.11.2 series (currently...
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2020-08-31 Jim ProcterJAL-3680 merged description of individual cursor key...
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2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor...
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2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test
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2020-08-17 Jim ProcterJAL-3490 don't init the combo box's history cache for...
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2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop
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2020-08-17 Jim ProcterMerge branch 'task/JAL-3597memoryLeakTest' into develop
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2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests...
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2020-08-03 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into develop
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2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ...
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2020-07-28 Jim ProcterMerge branch 'feature/JAL-3615gzipXfam' into develop
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2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick
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2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzipped...
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2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their...
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2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints
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2020-07-27 Jim ProcterJAL-3697 show total number of features not shown
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2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to...
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2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,...
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2020-06-29 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2020-06-29 Jim ProcterJAL-3675 2.11.1.1 release notes
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2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all
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2020-06-29 Jim ProcterJAL-3493 failing test - creates a highlight and column...
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2020-06-26 Jim ProcterJAL-3673 make sure font metrics are updated if dealing...
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2020-06-26 Jim ProcterJAL-3518 fix highlighting in Jalview for selections...
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2020-06-26 Jim ProcterJAL-3672 debug=false means no debug output
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2020-06-26 Jim ProcterJAL-3672 more efficient when debug not enabled
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2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
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2020-05-25 Jim ProcterJAL-3626 rescue automatic configuration of JALVIEW_VERSION...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files
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2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes
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2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentation...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy
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2020-04-21 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2020-04-21 Jim ProcterJAL-3567 JAL-3407 document sequence features report...
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2020-04-21 Jim ProcterMerge branch 'bug/JAL-3567virtualFeatureCoordinates...
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2020-04-21 Jim ProcterJAL-367 code tidy
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2020-04-21 Jim ProcterJAL-3567 translated rather than imputed peptide
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2020-04-14 Jim ProcterJAL-3407 JAL-3529 release notes
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2020-04-14 Jim ProcterMerge branch 'bug/JAL-3529_uniprotidsinstockholm' into...
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2020-04-14 Jim ProcterJAL-3529 revert ordering of DBRef addition so it reflects...
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2020-04-14 Jim ProcterJAL-3597 improved Memory test suite by detecting base...
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2020-04-14 Jim ProcterJAL-3407 release date set to 16th April, known issue...
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2020-04-14 Jim ProcterMerge branch 'testing/JAL-3577_jalviewversion_autoset_fixed...
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2020-04-09 Jim ProcterJAL-3577 automatically configure JALVIEW_VERSION for...
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2020-04-06 Jim ProcterJAL-3407 redact java 8 incompatible type inference
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2020-04-06 Jim ProcterJAL-3407 updated release date to Thursday 9th April...
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2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'...
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2020-03-31 Jim ProcterJAL-3407 basic doc for releasing jalview - will be...
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2020-03-31 Jim ProcterJAL-3407 updated release date to 2nd April, and first...
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2020-03-31 Jim ProcterMerge branch 'documentation/Release_2_11_1_Branch'...
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2020-03-30 Jim ProcterJAL-3407 2.11.1.0 release date bump - maybe tomorrow...
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2020-03-30 Jim ProcterJAL-3407 JAL-3130 back out java 9+ syntax that breaks...
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2020-03-20 Jim ProcterJAL-3562 exclude testNG groups from a build via -PtestngExcl...
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2020-03-20 Jim ProcterJAL-3407 JAL-3562 release notes
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2020-03-20 Jim ProcterJAL-3407 rejigging new features - simplify release...
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2020-03-20 Jim ProcterJAL-3407 reformat releases.html
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2020-03-20 Jim ProcterJAL-3407 JAL-3549 javadoc
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2020-03-20 Jim ProcterJAL-3407 - release notes for JAL-3547
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2020-03-20 Jim ProcterJAL-3549 javadoc
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2020-03-16 Jim ProcterJAL-3407 JAL-3187 help documentation for virtual features...
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2020-03-16 Jim ProcterJAL-3407 JAL-3549 explicitly mention the ‘no features...
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2020-03-16 Jim ProcterJAL-3407 group together ‘virtual feature’ related features...
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2020-03-16 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2020-03-05 Jim ProcterMerge branch 'improvement/JAL-3543_dont_report_null_versions...
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2020-03-03 Jim ProcterMerge branch 'groovy/JAL-3547_conservationsequenceexport...
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2020-03-03 Jim ProcterJAL-3547 groovy script to get the conservation sequence...
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2020-03-02 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous...
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2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into...
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2020-02-27 Jim ProcterJAL-3407 release notes for JAL-3412
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2020-02-27 Jim ProcterJAL-3412 patch for failing test
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2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into...
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2020-02-27 Jim ProcterJAL-3407 JAL-3296 release notes
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2020-02-27 Jim ProcterMerge branch 'bug/JAL-3296changeStartInvalidateCursor...
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2020-02-26 Jim ProcterJAL-3477 jalview.jvmmemmax / jvmmemmax maximum value...
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2020-02-26 Jim ProcterMerge branch 'bug/JAL-3477_memory_max_allocation' into...
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2020-02-26 Jim ProcterJAL-3407 release notes for JAL-3449 JAL-3393 JAL-3420...
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2020-02-26 Jim ProcterMerge branch 'improvement/JAL-3449_add_install4j_installer_g...
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2020-02-26 Jim ProcterJAL-3541 docs for enabling OpenClover coverage reports...
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2020-02-26 Jim ProcterJAL-3541 removed clover report generation debug flag...
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2020-02-26 Jim ProcterJAL-3541 configurables for clover report generation...
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2020-02-25 Jim ProcterJAL-3541 track own jalview.gui.Desktop clover source...
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2020-02-25 Jim ProcterJAL-3541 2g heap for clover xml and clover html - remove...
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2020-02-25 Jim ProcterJAL-3541 add verbose and heap setting for HTML Report...
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2020-02-25 Jim ProcterJAL-3541 use javaExec to run clover tasks
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2020-02-21 Jim ProcterMerge branch 'bug/JAL-3536getCrossrefTwice' into develop
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2020-02-21 Jim ProcterJAL-3186 ensure transparency slider position is updated...
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