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jalview.git
2015-05-07
Jim Procter
JAL-1731 fix JPred4 citation in legacy client code
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2015-05-07
Jim Procter
JAL-1551 formatting
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2015-05-07
Jim Procter
JAL-1601 migrated the JABAWS 2.1 jpred burial represent...
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2015-04-16
Jim Procter
dummycommit
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-12-14
Jim Procter
JAL-1617 test to verify Uniprot cross-references are...
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2014-12-09
gmungoc
JAL-1616 loading of datasets from XML patched
Release_2_8_2_Branch
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2014-12-08
Charles Ofoegbu
JAL-1613 hotfix for duplicated sequence after pairwise...
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2014-12-05
gmungoc
JAL-1614 flag 'protein' removed
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2014-12-03
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
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2014-12-03
Jim Procter
Merge branch 'JAL-1517_release282' into Release_2_8_2_B...
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2014-12-03
Jim Procter
JAL-1517 update applet authors list
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2014-12-03
Jim Procter
Merge branch 'JAL-1517_release282' into Release_2_8_2_B...
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2014-12-03
Jim Procter
JAL-1517 disable desktop 'take snapshot' menu item...
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2014-12-03
Jim Procter
Merge branch 'JAL-1517_release282' into Release_2_8_2_B...
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2014-12-03
Jim Procter
JAL-1517 dropped jnlp file in help documentation in...
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2014-12-03
Jim Procter
Merge branch 'JAL-1517_release282' into Release_2_8_2_B...
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2014-12-03
Jim Procter
JAL-1517 updated library licensing info
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2014-12-03
Jim Procter
JAL-1517 release notes
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2014-12-02
Jim Procter
Merge branch 'JAL-1517_release282' into Release_2_8_2_B...
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2014-12-02
Jim Procter
JAL-1517 typo
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2014-12-02
Jim Procter
Merge branch 'JAL-1517_release282' into Release_2_8_2_B...
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2014-12-02
Jim Procter
JAL-1517 TOC items must be on one line for help2Website
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2014-12-02
Jim Procter
Merge branch 'JAL-1602_282_release' into Release_2_8_2_...
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2014-12-02
Jim Procter
JAL-1602 tweak VM inclusion options
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2014-12-02
Jim Procter
Merge branch 'JAL-1517_release282' into Release_2_8_2_B...
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2014-12-02
Jim Procter
JAL-1517 documentation for 2.8.2 release
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2014-12-02
Jim Procter
Merge branch 'JAL-1602_282_release' into Release_2_8_2_...
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2014-12-02
Jim Procter
JAL-1602 typo in jsonsimple jar
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2014-12-02
Jim Procter
Merge branch 'JAL-1602_282_release' into Release_2_8_2_...
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2014-12-02
Jim Procter
JAL-1602 add missing jars to install
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2014-12-01
Jim Procter
Merge branch 'JAL-1602_282_release' into Release_2_8_2_...
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2014-12-01
Jim Procter
JAL-1602 upgrade to InstallAnywhere 2014 J17 runtimes
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2014-12-01
Jim Procter
JAL-1199 JAL-1569 incremental patch allow non-standard...
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2014-12-01
Jim Procter
JAL-1517 updating author list
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2014-12-01
Jim Procter
JAL-1517 updating authors list
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2014-12-01
Jim Procter
JAL-795 hack to ignore black colour in annotation element.
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2014-12-01
Jim Procter
JAL-1601 ignore the JABA Jpred client in Jalview 2...
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2014-12-01
gmungoc
JAL-429 Phylip added to help page
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2014-12-01
gmungoc
JAL-1544 typos/formatting in help (and Phylip added)
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2014-12-01
Jim Procter
Merge branch 'bug/JAL-1610refAnnotationsInViews' into...
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2014-12-01
Jim Procter
file for JAL-1268 jalview.io.Jalview2xmlTests.testTCoff...
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2014-11-28
Jim Procter
Merge branch 'JAL-1517_release282' into Release_2_8_2_B...
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2014-11-28
Jim Procter
JAL-1517 first stab at release notes... lots of documen...
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2014-11-28
gmungoc
JAL-1610 check reference annotations against alignment...
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2014-11-28
Jim Procter
JAL-1522 output installation type to stdout
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2014-11-28
Jim Procter
JAL-1522 remove build/deployment details imported from...
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2014-11-28
Jim Procter
JAL-1517 formatting
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2014-11-28
Jim Procter
JAL-1611 revise log level to reduce verbosity
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2014-11-28
Jim Procter
JAL-1583 javadoc and fix constructor signature
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2014-11-28
Jim Procter
JAL-1342 document argument to specify preferred JABA...
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2014-11-28
Jim Procter
JAL-1604 formatting
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2014-11-28
Jim Procter
JAL-1604 revised wording and internationalised dialog
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2014-11-28
Jim Procter
JAL-1583 back out original fix and simply check MSAWSTh...
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2014-11-28
Jim Procter
JAL-1583 formatting
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2014-11-28
Jim Procter
JAL-1583 new validInput flag set according to validity...
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2014-11-28
Jim Procter
JAL-1583 refactored addInternalFrame to allow webservic...
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2014-11-28
Jim Procter
JAL-1517 formatting/tidy
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2014-11-27
Jim Procter
JAL-1517 svg==scalable :)
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2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...
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2014-11-27
Jim Procter
JAL-674 add sequence associated annotation rows to...
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2014-11-27
Jim Procter
JAL-1177 JAL-905 cannot recover sequences from dataset...
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2014-11-27
Jim Procter
JAL-674 avoid writing \0 for chain code
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2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...
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2014-11-27
Jim Procter
JAL-674 patch to fix bug with showing reference annotat...
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2014-11-27
Jim Procter
JAL-674 formatting
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2014-11-27
Jim Procter
JAL-674 unused variable
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2014-11-27
Jim Procter
JAL-674 bug in test
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2014-11-27
gmungoc
JAL-1603 if Chimera selected in Preferences, warn if...
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2014-11-27
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
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2014-11-27
Jim Procter
JAL-674 test that PDB annotation created when importing...
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2014-11-27
Jim Procter
JAL-674 patch NPE bug when test run in isolation
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2014-11-27
Jim Procter
JAL-674 fix test properties path and add properties...
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2014-11-27
Jim Procter
JAL-674 JAL-966 new method to retrieve all views
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2014-11-27
Jim Procter
organise imports
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2014-11-27
Jim Procter
JAL-966 promote getName to an api method
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2014-11-27
Charles Ofoegbu
Merge branch 'bug/JAL-1604_Entire-alignment-submission...
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2014-11-27
Charles Ofoegbu
JAL-1604 Entire sequence submision for MSA job bugfix
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2014-11-27
Charles Ofoegbu
Merge branch 'bug/JAL-1583_MSA_webservice_validation...
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2014-11-27
Charles Ofoegbu
modified regex for sequence validation
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2014-11-27
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
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2014-11-26
Charles Ofoegbu
Merge branch 'bug/JAL-207_pairwise-alignment-context...
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2014-11-26
Charles Ofoegbu
JAL-207 pairwise alignment sequence contexts propergati...
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2014-11-26
Charles Ofoegbu
Merge branch 'bug/JAL-998_wrap-sequence-tooltip' into...
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2014-11-26
Charles Ofoegbu
JAL-998 fixed empty tooltip bug when only one sequence...
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2014-11-26
Jim Procter
Merge branch 'JAL-674_fixannotlabels' into Release_2_8_...
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2014-11-26
Jim Procter
JAL-674 make RNAML-extracted secondary structure lines...
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2014-11-26
Jim Procter
JAL-1578 fix logic for showing score when no descriptio...
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2014-11-26
Jim Procter
JAL-674 JAL-1578 commented code for displaying annotati...
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2014-11-26
Jim Procter
JAL-674 friendly name for PDB file included in secondar...
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2014-11-26
Jim Procter
JAL-674 employ the provided DNA/Protein matrix string...
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2014-11-26
Jim Procter
JAL-674 disable addition of PDBRESNUM annotation line
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2014-11-26
Jim Procter
JAL-674 nicer temperature factor labelling and include...
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2014-11-26
gmungoc
JAL-1528 NullPointer check / more informative PDB fetch...
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2014-11-25
Jim Procter
Merge branch 'bug/JAL-689' into Release_2_8_2_Branch
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2014-11-25
Jim Procter
fix for JAL-689 ensure fastpainting flag set only when...
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2014-11-25
Jim Procter
formatting
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2014-11-25
Jim Procter
patch for JAL-1599 - annotation row constructed by...
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2014-11-25
Jim Procter
Merge branch 'patch_JAL-689' into Release_2_8_2_Branch
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2014-11-25
Jim Procter
back out duplicate jfree classpath entry
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