source.jalview.org Git - jalview.git/history - src/jalview/bin/Jalview.java

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[jalview.git] / src / jalview / bin / Jalview.java

2022-06-13	Jim Procter	Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...	blob \| commitdiff
2022-06-13	Ben Soares	JAL-3416 remove flat as default for linux	blob \| commitdiff \| diff to current
2022-06-13	Ben Soares	JAL-3416 Added some mac specific FlatLAF settings....	blob \| commitdiff \| diff to current
2022-03-08	Ben Soares	JAL-3103 Removed code and unused widgets for defaultBrowser	blob \| commitdiff \| diff to current
2022-03-08	Ben Soares	JAL-3103 Remove BrowserLauncher2 and use Desktop.browse...	blob \| commitdiff \| diff to current
2022-03-07	Ben Soares	JAL-3103 Switched to (a wrapper around) BrowserLauncher2	blob \| commitdiff \| diff to current
2022-03-04	Jim Procter	JAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and...	blob \| commitdiff \| diff to current
2022-03-04	Jim Procter	JAL-3746 JAL-3814 NONEWS property	blob \| commitdiff \| diff to current
2022-02-17	Jim Procter	JAL-3959 add key retrieval urls that support CORS neede...	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 read ~/.jalview_properties before initialising...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2022-01-28	Ben Soares	Merge branch 'develop' into JAL-3416_different_look_and...	blob \| commitdiff \| diff to current
2022-01-10	Ben Soares	JAL-3937 enable AIA download of intermediate certificat...	blob \| commitdiff \| diff to current
2022-01-10	Ben Soares	JAL-3937 enable AIA download of intermediate certificat...	blob \| commitdiff \| diff to current
2021-10-05	Ben Soares	JAL-3416 make flat default laf for linux	blob \| commitdiff \| diff to current
2021-10-04	Ben Soares	JAL-3416 updated FlatLaf to 1.6 and added some tabbed...	blob \| commitdiff \| diff to current
2021-10-04	Ben Soares	Merge branch 'develop' into JAL-3416_different_look_and...	blob \| commitdiff \| diff to current
2021-09-21	Ben Soares	JAL-3691 automatic insertion of Locale.ROOT to toUpperC...	blob \| commitdiff \| diff to current
2021-09-15	Jim Procter	JAL-3741 http to https (and jar to jvp for exampleFile...	blob \| commitdiff \| diff to current
2021-02-05	Jim Procter	JAL-3812 new argument ‘-nohtmltemplates’ and user prefe...	blob \| commitdiff \| diff to current
2021-02-05	Jim Procter	JAL-3814 NONEWS property	blob \| commitdiff \| diff to current
2021-01-08	Ben Soares	JAL-3419 improved look of tabs	blob \| commitdiff \| diff to current
2021-01-08	Ben Soares	JAL-3416 Added FlatLightLaf, use with -Dlaf=flat property	blob \| commitdiff \| diff to current
2020-12-08	Ben Soares	Merge branch 'merge/develop_and_rebase_squashed_merge_J...	blob \| commitdiff \| diff to current
2020-12-07	Ben Soares	JAL-3594 added BG logo. Changed some named Jalviews...	blob \| commitdiff \| diff to current
2020-12-01	Ben Soares	JAL-3660 Fix for specified output format when using...	blob \| commitdiff \| diff to current
2020-12-01	Ben Soares	JAL-3530 Added a -nowebservicediscovery command line...	blob \| commitdiff \| diff to current
2020-11-27	Ben Soares	JAL-3660 Fix for specified output format when using...	blob \| commitdiff \| diff to current
2020-11-13	Jim Procter	JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3757 JAL-3689 Fixed checks for URLs by adding check...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3633 Set proxy preferences before web calls in...	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3633 ensure check both or https:// for urls	blob \| commitdiff \| diff to current
2020-11-05	Ben Soares	JAL-3608 cherry pick of 92cb745e7	blob \| commitdiff \| diff to current
2020-09-24	Jim Procter	JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...	blob \| commitdiff \| diff to current
2020-09-23	Ben Soares	JAL-3757 JAL-3689 Fixed checks for URLs by adding check...	blob \| commitdiff \| diff to current
2020-09-23	Ben Soares	JAL-3633 ensure check both or https:// for urls	blob \| commitdiff \| diff to current
2020-09-17	Jim Procter	JAL-3741 http to https (and jar to jvp for exampleFile...	blob \| commitdiff \| diff to current
2020-09-17	Jim Procter	JAL-3750 parse protocol before checking if argument...	blob \| commitdiff \| diff to current
2020-09-14	Ben Soares	JAL-3609 HiDPI scale setting done via system prop in...	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	Merge branch 'patch/JAL-3561_JAL-3660_fileformatexport_...	blob \| commitdiff \| diff to current
2020-08-12	Jim Procter	Merge branch 'task/JAL-3608_property_set_laf_and_tests...	blob \| commitdiff \| diff to current
2020-08-12	Ben Soares	JAL-3608 Changes from code review CR-JAL-236	blob \| commitdiff \| diff to current
2020-08-05	Jim Procter	Merge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL...	blob \| commitdiff \| diff to current
2020-08-04	Ben Soares	JAL-3477 Added -help text for jvmmempc and jvmmemmax...	blob \| commitdiff \| diff to current
2020-08-04	Ben Soares	JAL-3477 Added -help text for jvmmempc and jvmmemmax...	blob \| commitdiff \| diff to current
2020-07-08	Ben Soares	Merge branch 'task/JAL-3609_HiDPI_support_in_java'...	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3608 Changes from code review CR-JAL-236	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3608 Changes from code review CR-JAL-236	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3608 ex stacktraces now go to Cache.log.debug	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3628 System.out/err -> Cache.log.info/error	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3628 System.out/err -> Cache.log.info/error	blob \| commitdiff \| diff to current
2020-07-01	Ben Soares	Merge branch 'task/JAL-3608_property_set_laf_and_tests_...	blob \| commitdiff \| diff to current
2020-06-16	Ben Soares	JAL-3608 non-JS cherry-pick	blob \| commitdiff \| diff to current
2020-06-16	Jim Procter	JAL-3660 JAL-3561 output alignment as requested file... bug/JAL-3561_translatefileformats	blob \| commitdiff \| diff to current
2020-06-16	Ben Soares	JAL-3608 formatting save only	blob \| commitdiff \| diff to current
2020-05-15	Ben Soares	JAL-3609 HiDPI scale setting done via system prop in...	blob \| commitdiff \| diff to current
2020-05-04	Ben Soares	JAL-3608 streamlined LaF methods and allow specificying...	blob \| commitdiff \| diff to current
2020-05-03	Ben Soares	JAL-3608 also look at user pref PREFERRED_LAF	blob \| commitdiff \| diff to current
2020-05-01	Ben Soares	JAL-3608 Added java builtin NimbusLookAndFeel option...	blob \| commitdiff \| diff to current
2020-04-30	Ben Soares	JAL-3608 Enforcing MetalLookAndFeel as default on linux...	blob \| commitdiff \| diff to current
2020-04-30	Ben Soares	JAL-3608 Added 'metal' option for laf property	blob \| commitdiff \| diff to current
2020-04-23	soares	JAL-3608 JAL-3416 Added a 'gtk' option. Not currently...	blob \| commitdiff \| diff to current
2020-04-22	soares	JAL-3608 saved in Eclipse with auto formatting	blob \| commitdiff \| diff to current
2020-04-22	Ben Soares	JAL-3608 Added CrossPlatform LaF and made configurable...	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-02-27	Ben Soares	JAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console	blob \| commitdiff \| diff to current
2020-02-27	Ben Soares	JAL-3543 Conditional reporting of Install4j and Getdown...	blob \| commitdiff \| diff to current
2019-11-22	Ben Soares	JAL-3449 install4j version, install4j template version...	blob \| commitdiff \| diff to current
2019-11-12	gmungoc	JAL-3274 resource path correction, code tidying (consta...	blob \| commitdiff \| diff to current
2019-11-05	gmungoc	JAL-3210 JAL-3130 skip Taskbar in JalviewJS	blob \| commitdiff \| diff to current
2019-11-05	gmungoc	JAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-07-02	Jim Procter	Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu	blob \| commitdiff \| diff to current
2019-06-26	Jim Procter	JAL-3334 fix - always load full SO to resolve the seque...	blob \| commitdiff \| diff to current
2019-06-26	Jim Procter	JAL-3111 get rid of nasty tab characters	blob \| commitdiff \| diff to current
2019-06-19	Ben Soares	JAL-3321 Last pieces of the getdown-launcher.jar upgrad...	blob \| commitdiff \| diff to current
2019-06-17	Jim Procter	JAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu	blob \| commitdiff \| diff to current
2019-06-14	Jim Procter	JAL-3111 report build type and commit in stdout from...	blob \| commitdiff \| diff to current
2019-05-21	Ben Soares	JAL-3247 Launcher start improvements. RPM and DEB no...	blob \| commitdiff \| diff to current
2019-04-25	Ben Soares	JAL-3224 JAL-3225 Some fixes in install4j template...	blob \| commitdiff \| diff to current
2019-04-25	Ben Soares	JAL-3224 JAL-3225 Added lines to check for updates...	blob \| commitdiff \| diff to current
2019-04-24	Jim Procter	Merge branch 'task/JAL-3225_Integration_Gradle_building...	blob \| commitdiff \| diff to current
2019-04-15	Ben Soares	JAL-3130 Helper classes to take Class Exceptions when...	blob \| commitdiff \| diff to current
2019-04-05	hansonr	fixes for Jalview command-line URI code	blob \| commitdiff \| diff to current
2019-04-03	hansonr	replacing @j2sNative with @j2sIgnore where appropriate...	blob \| commitdiff \| diff to current
2019-04-03	hansonr	j2sNative clean-up. Fixes problem with second try of...	blob \| commitdiff \| diff to current
2019-04-01	Ben Soares	JAL-3130 JAL-3007 Added gradle build for Java 11 and...	blob \| commitdiff \| diff to current
2019-03-27	gmungoc	JAL-3032 small formatting and isJS() tidy	blob \| commitdiff \| diff to current
2019-03-27	hansonr	isJS cleanup	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	Merge branch 'feature/JAL-3127_seqidChainshading' into...	blob \| commitdiff \| diff to current
2019-03-06	gmungoc	JAL-3035 more das bits removed	blob \| commitdiff \| diff to current
2019-03-06	Jim Procter	JAL-3208 re-enable the setprop CLI arg, but only in...	blob \| commitdiff \| diff to current
2019-02-28	gmungoc	JAL-3032 any url parameter not "j2s..." taken as Jalvie... Jalview-BH/JAL-3026-JAL-3063-JAXB	blob \| commitdiff \| diff to current
2019-02-25	gmungoc	JAL-3032 Jalview (as JS) parse query params to main...	blob \| commitdiff \| diff to current
2019-01-26	hansonr	Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...	blob \| commitdiff \| diff to current
2019-01-21	hansonr	isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...	blob \| commitdiff \| diff to current
2019-01-18	hansonr	canvas line/font/pixel fixes; menu accelerators;	blob \| commitdiff \| diff to current
2019-01-11	hansonr	(commented out but potentially useful) methods to tap...	blob \| commitdiff \| diff to current
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